Methylosinus sporium: MSP5_003352
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Entry
MSP5_003352 CDS
T11225
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
mspr Methylosinus sporium
Brite
KEGG Orthology (KO) [BR:
mspr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mspr03400
]
MSP5_003352 (addB)
Enzymes [BR:
mspr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSP5_003352 (addB)
DNA repair and recombination proteins [BR:
mspr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
MSP5_003352 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
XWX56285
LinkDB
All DBs
Position
complement(3520707..3523823)
Genome browser
AA seq
1038 aa
AA seq
DB search
MASRYVFSIASGASFLGAFTRALLDGAIIPGLSRESGPLALAATTIYVPTQRAARALAAQ
FSTAIEAPAALLPRILPLGDLDEQEASALFHADLDSSEATLELALAPAIEELDRRLILAE
LVLQWARALRHAIVSIDPTGAVEHDPREMLLIAPSPTSAYALSGELARLIDEFAIEKLGA
GALAGLAEEAYDRFFAITANFLKIALEDWPNILSGCGLIDRAARQTALIEAQIAHLERGG
ARGPVIALGSTGAHPATARLLAAIARMERGAVILPGLDLELNEAAWRRVGDDGENEREEP
SFTHPQTLLKRLLSTLGVTREEVRPLGSAPPVLQARTRLLAEALLPADCTDYWRDFRAAA
AEGFANALAGVSFIEAADEREEALALALSMREALETPGRTAALITPDRDIARRVCAELAR
WGVEVDDSAGRPLGATPIGALARLVAATAEDGASAIDAAALLAHPLTRLGLERAEIERLA
PLVEIAVLRNVESGGSFAAMAAPARRLAEETHAHPALKRICEEDWRAIEDLLARLDEALS
PLGALTPEARLGERARAHALALEKIANKEPAGEGVEQLLQLFDALEAAGSALVFDAAGYA
SFFDRLAFEMSAPSPRRAHPRLKILGLLEARLLDADLALLAGLDETIWPPQAESGAFLNR
AMRRQLGLSPPERRIGQTAHDFSMAFGAAEVVVSRAKKRDGAPTVVSRLIARLAALSGEA
FAACKARGDEKCALAAALDRPQEIRAISRPLPRPPVELRPTRLSVTRVEKLRRDPYSIFA
EYILRLPPLPPLGALKGAREIGVAVHAALAKFQEAHPKGPLPEDARALLVDIAREELGEF
LDDPSFIAFDWPRIEAGLDHALAFERERREQAREIFIEKGAGWKLTLADGSVFTLSCVAD
RIEVDASGEAFVFDYKTGNPPTASQVGAGFSPQLTLEAAMIEAGAFESIGAPHVAGAAYV
RLGSKTGGETQWLKFKDKSFGDVVAEHRANLFVLLNQFRLADTPYPSRPWVEFASRYSDY
DHLARVKEWSREGGGGEE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcgctacgtattttccatagcctccggcgcctcctttctcggcgccttcacg
cgagcgctgctggatggcgcgatcatccccggcctctcgcgcgagagcggcccgctggct
ctggccgccaccacgatctatgtgccgactcagcgcgccgcgcgggcgctggcggcgcaa
ttctccaccgcgatcgaggcgccggcggcgttgctgccgcgcatattgccgctcggcgat
ctcgacgagcaggaggcctcggcgctgttccacgccgatctcgattccagcgaggcgacg
ctggagctggcgctggcgccggcgatcgaagagctcgaccgccggctgattctggccgag
ctggtgctgcaatgggcgcgcgcgctgcgccacgccatcgtctccatcgacccgaccggc
gctgtcgagcacgacccgcgcgaaatgctgctgatcgccccctcccccaccagcgcctat
gcgctctccggcgagctggcgcggctcatcgacgaattcgcgatcgagaagctcggcgcc
ggcgcgctcgccggcctcgcggaggaggcctatgaccgcttcttcgcgatcaccgccaat
tttctgaaaatcgcgctcgaggattggccgaatattctctccggctgcggcctcatcgac
cgcgccgcgcgtcagacggcgctgatcgaggcgcagatcgcgcatctcgagcgcggcggc
gcgcgcggcccggtgatcgcgctcggctccaccggcgcgcatccggcgacggcgcgcctt
ttggcggcgatcgcgcgaatggagcgcggcgcggtgatcctgcccggcctcgatctcgag
ctaaacgaggccgcctggcgccgcgtcggcgacgatggcgagaatgagcgtgaggagccg
agcttcacccatccgcagactttgctgaagcgcctcctatccaccctgggcgtcacgcgc
gaggaagtccgccccctcggctccgctccgcccgtgctgcaagcgcggacgcggctgctg
gccgaggcgctgctccctgccgattgcaccgattattggcgcgacttccgcgccgccgcg
gccgagggcttcgcgaatgcgctcgccggcgtctccttcatcgaggcggcggacgagcgt
gaggaggcgctggccctcgccctttccatgcgcgaagcgctggagacgccgggccgcacg
gcggcgctcatcacgcccgatcgcgacatcgcccgccgcgtctgcgccgagctggcgcgc
tggggagtcgaggtcgacgattcggccggccgcccgctcggcgcgacgccgatcggcgcg
ctggcccggctcgtcgccgccacggcggaggacggcgcctcggccatcgacgcagccgcg
cttctcgcccatccgctgacgcgccttggcctcgagcgtgcggagatcgagcgcctcgcc
ccgctggtcgagatcgccgtgctgcgcaatgtcgagagcggcggctccttcgccgccatg
gccgcgccggcgcgccggctcgccgaagagacgcacgcccatccggcgctgaaacgtatt
tgcgaggaggattggcgcgcgatcgaagatctgctcgcccgcctcgacgaagcgctttcg
cctctcggcgcgctcacgccggaggcgcgcctcggcgagcgggcacgcgcccatgcgctg
gcgttggagaaaatcgccaacaaggagcccgcgggcgagggcgtcgagcaattgctgcag
ctcttcgacgcgctcgaggccgcaggcagcgcgctcgtcttcgacgccgccggctacgcc
tccttcttcgatcgcctcgccttcgagatgagcgcgcccagcccgcgccgcgcgcatccg
cgtctcaaaattctcggcctgctggaagcgcgcctgctcgacgccgatctcgcgctgctc
gccgggctcgacgagacgatctggccgccacaggccgaatccggcgcctttctcaatcgc
gccatgcgccggcaattgggcctctcgccgccggagcgccgcatcggccagacggcgcat
gacttctccatggccttcggcgcggcggaagtcgtcgtcagccgcgcgaaaaagcgcgac
ggcgcgccgaccgtcgtctcgcgcctgatcgcgcgattggcggcgctttccggcgaggcc
tttgccgcctgcaaggcgcgcggcgatgaaaaatgcgcgctcgccgccgcgctggatcgc
ccgcaggagattcgcgccatatctcgcccgctgccgcgcccgcccgtggagctgcggccg
acgcggctcagcgtcacgcgcgtcgaaaaattgcgccgcgatccctattccatcttcgcc
gaatatattctgcgtctgccgcccttgccgccgctcggcgcgctcaagggcgcccgcgag
atcggcgtcgccgttcacgccgcgctggcgaaattccaggaggcgcatcccaaaggcccg
cttccggaagacgcgcgcgcgctgctcgtcgatatcgcgcgcgaggagctcggcgagttc
ttggacgatccgtccttcatcgccttcgattggccgcgcatagaggccggcctcgatcat
gcgctcgctttcgagcgtgaacgccgcgagcaggcgcgcgagattttcatcgagaaaggc
gccggatggaagctgacgctcgccgacggcagcgtcttcaccctctcctgcgtcgccgat
cgcatagaggtggacgcgagcggcgaagctttcgtcttcgattacaagaccggcaatccg
ccgaccgcatcacaagtcggcgcgggcttctcgccgcagctgacattggaggcggcgatg
atcgaggccggcgccttcgaatccatcggcgcgccgcacgtcgccggcgccgcctatgtg
cggctcggcagcaagaccggcggcgagacgcaatggctgaaattcaaggacaagagtttc
ggcgacgtcgtcgccgagcatcgcgccaatctcttcgtgctgctgaatcagtttcgtctc
gccgacacgccctatccctcgcggccatgggtggagttcgcctcgcgctacagcgactac
gaccatctcgcacgggtgaaggaatggtcgcgcgagggcggcggcggcgaggagtga
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