Methylosinus sporium: MSP5_003372
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Entry
MSP5_003372 CDS
T11225
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
mspr Methylosinus sporium
Pathway
mspr03030
DNA replication
mspr03430
Mismatch repair
mspr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mspr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSP5_003372 (holA)
03430 Mismatch repair
MSP5_003372 (holA)
03440 Homologous recombination
MSP5_003372 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mspr03032
]
MSP5_003372 (holA)
03400 DNA repair and recombination proteins [BR:
mspr03400
]
MSP5_003372 (holA)
Enzymes [BR:
mspr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MSP5_003372 (holA)
DNA replication proteins [BR:
mspr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MSP5_003372 (holA)
DNA repair and recombination proteins [BR:
mspr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MSP5_003372 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
HP_1247_M
Motif
Other DBs
NCBI-ProteinID:
XWX56305
LinkDB
All DBs
Position
3541169..3542197
Genome browser
AA seq
342 aa
AA seq
DB search
MTAIKTRDAERFVKAPPANIFMFLLHGADAGLVRERALAIVAQRVDDRHDPFQCVEMSGD
AVAADPLSLLDEANTIPLFGGRRAIIVETGGKSIVSPLEQLLAAPPVDCAIVLTAGALKR
DAPLRKLIEPSKIAAAVECNPDDEQDLHALIDNSLREAGFSVTPEARLLLQAALGEDRRM
SRSELAKLMLYKHGASAIEAGDVEDIVAHASNIASDRLVLDAFSGQADAAGEAFDRAVAG
GGDAGQLLNGALRYAMALHRARLTVEREGRPDFGITILMRSGFGFSQRPQLEQHLRIWSA
AKVAALLPALRDANHRARANAALAEMEAGRALLRIASQAGRR
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccatcaagacccgcgacgccgagcgcttcgtgaaggcgccgccggccaatatt
ttcatgttcctgctccatggcgccgacgccggcctcgtgcgcgagcgcgcgctcgccatt
gtcgcgcagcgcgtcgacgatcggcatgatccgttccaatgtgtggagatgagcggcgac
gccgtggccgctgatccgctgtcgctgctcgacgaggccaatacgattccgctgttcggc
ggcaggcgtgcgatcatcgtcgagacgggcggcaaatccattgtctcgccgctcgagcaa
ttgctcgccgcgccgccggtggattgcgccatcgtgctcaccgccggcgcgctgaagcgc
gatgcgccgctgcgcaagctgatcgagccgtccaagatcgccgccgccgtcgaatgcaat
ccagacgatgagcaggatctgcatgcgctgatcgacaacagcctgcgcgaggcgggcttt
tccgtcacgccggaggcgcggctgctgctgcaggcggcgctcggcgaggatcgccgcatg
agccgttccgagctcgccaagctgatgctctataagcatggcgcgagcgcgatcgaggcc
ggcgatgtcgaggatatcgtcgcgcatgcctccaatatcgcctccgatcgcttggtgctg
gacgctttctcggggcaggccgacgccgctggcgaagccttcgacagagcggtcgccggc
ggcggcgacgccgggcagctattgaacggcgcgctgcgctacgcgatggcgctgcatcgc
gcgcggctcaccgtggagcgcgagggacggccggatttcggcatcaccattttgatgcgc
agcggtttcggcttctcgcagcggccgcagctcgagcagcatttgcgtatctggtccgcg
gcgaaagtggcggcgctgctgccggccttgcgcgacgccaatcatcgcgcccgcgccaat
gccgctctggcggagatggaggcaggccgcgcgctgttgcgcatagcgagtcaggccggg
cggcgctga
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