Marinobacter salinus: BKP64_04830
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Entry
BKP64_04830 CDS
T04766
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
msq
Marinobacter salinus
Brite
KEGG Orthology (KO) [BR:
msq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msq03019
]
BKP64_04830
Enzymes [BR:
msq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BKP64_04830
Messenger RNA biogenesis [BR:
msq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BKP64_04830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
ResIII
NACHT
AAA_30
AAA_23
Cas3-like_C_2
ABC_tran
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
AOY90158
UniProt:
A0A1D9GRA7
LinkDB
All DBs
Position
1048825..1052688
Genome browser
AA seq
1287 aa
AA seq
DB search
MMEQLGACNQQEAARIVKAVARTKGNPGQKDLEKMAGWLRRGLEKVQQRHALHRPASFPE
GLPVSERVEDIGKAIENHQVVIIAGETGSGKTTQIPKICMNRGRGIRGLIGHTQPRRIAA
RSVAARIAEELGEQTGQQIGYQVRFTDTTSEQSRVKVMTDGILLAEIQHDRFLDRYDTLI
IDEAHERSLNIDFLLGYLRQLLPKRPDLKVIITSATIEVERFSEFFDQAPVIEVSGRTYP
VDIRYRPLTGDEDDRDQGWTDGVIGALDEIEQHERSEKQPPGDVLVFLPGEREIRNLSKV
LRHVDLKHTEVLPLYSRLSNQEQNRIFQSHRGRRIVLSTNVAETSLTVPGIRYVIDTGVA
RISRYSVRSKIQRLPIEPVSQASANQRAGRCGRVAPGICFRLYDETDFINRPEYTDPEVL
RTNLASVILQMATSGLGEIRNFPFLESPDSRQVNDGYKLLEELSAVDDKRRVTRLGQTMA
RLPLDPRLARMLVTSADHGSLAETLIIIAGLSVQDPRERPQDKQQAADQAHAPFNDKDSD
FVTLLNIWNFYEEQRQELSHNQMKKVCQKSFLSWMRMREWRDIHRQLTLICREQKLTFNK
DVASYDAVHKAILAGLLGQIAVKVEKKEYLATRNRKVMIFPGSKVAKTGPKWIVATEIVE
TSRVFARMVAAIQPEWIEPLAGHVVKHHFFEPHWEQKRAQVMGYEKVTLYGLDVVPKRRI
PYSKVDPAECRNLFIRRALVEGDYRSKAPFIVRNREMLDTVENLEKKTRRRDLLVDDEVL
VEFYDQRLPTDIVSGRHFETWWKGLSSQELKALELTEQDILQRPVDAQAAELYPDYLEWE
GVRYPLSYEFEPTSERDGVTLQVPLMALRQIPSRRLEWLVPGLLREKCIALVKGLPKSLR
RNFVPVPDFVDAALANMQPSNEPLALQLGEQLRRMTGVRIDPQAWPESELPRHLRMNLRV
MGDGGKVMAESRETDELQGQLEGKAEEALASATSENPENELSGEHTDWQFGDLPEQVQTE
KGGMKVTVYPALEDLGKTVCQIRCLDRLTAEDTTRKGVARLILNRFGKTLDDLDRKLPRF
RQSALMFAPVGQAKVLLDDLVLATVMTHFLGESVPRTSDDFDRLFDRHRGDFIPALEEAD
ERLYQAMSGYQKVAKRLKGKINLALANSMADLKFQLQNLVYPGFLVATPPEWLAEFGRYF
EAALIRLEKMPREMGREREFLHTIEGLWSRYASKRDEQQRQGIRDPELTVYRWMLEEYRV
SFFAQQLGTAMTVSIKRLDKQWELTRV
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgatggagcagcttggcgcctgcaatcagcaggaagccgcccgcattgtgaaagcagtc
gctcgcacaaaaggtaatcctggccagaaagacctggagaaaatggcgggctggctcagg
cgtggcctcgaaaaggtacagcagcgccatgccttgcaccggcctgccagtttccccgag
gggctgccagtatcagagcgggtggaagacatcgggaaagcgattgagaaccatcaggtt
gtcatcatcgccggtgaaaccggatcgggcaaaactacccagattcctaaaatctgcatg
aatcgtggtcgcggcatccgggggttgatcggtcatactcagccacgtcgaattgccgcg
cgcagtgttgctgcccggattgcggaagagttgggtgaacagacggggcagcaaattggc
tatcaggtccgcttcaccgacaccacatcggaacagtcccgggtcaaggtgatgacagac
gggatcttgctggcggaaattcagcatgaccgctttctcgaccgttacgatacgctgatc
atcgatgaggcacatgagcgcagtctcaatatcgattttctgttgggttacttgagacag
ctgctgcccaagcgcccggacctcaaagtgattattacctcagccaccattgaggtagag
cggttcagcgaattttttgatcaggcaccggtcatcgaagtcagcgggcgcacttacccg
gtagacattcgttatcgccctttaaccggcgatgaagacgaccgtgaccagggctggaca
gacggtgtaatcggagctctggacgaaatcgaacagcatgagcgttcggagaagcagccc
cccggggacgtgttggtcttcctgccgggagagcgagaaatccggaaccttagcaaggtg
cttcggcacgtggatctcaagcacacagaagttttgcctctgtattcacggctgagtaac
caggaacagaaccggattttccagtcccaccgtgggcgtagaattgtgttgtccaccaac
gttgccgagacctccctgacggtgccgggtatccgttatgtgatcgataccggtgtagcc
cggatcagccgttacagtgtacgttcgaaaatccagcgtctgcccatcgagccagtctca
caggccagtgcgaatcagcgggcagggcggtgtggtcgggtcgctccgggtatctgcttc
cggctctacgacgagaccgacttcatcaatcggccggagtacactgacccggaagtcctt
cggaccaacctcgcatccgttatcctgcaaatggcgacctctggcctgggtgagattcgc
aactttccgttcctggaatctcccgatagccgccaggtgaacgatggctacaagctcctt
gaagagctcagtgcggtcgacgacaaacggcgtgtgaccaggctgggccagaccatggcg
cggctgcctctggatccgcgcctggcccgtatgctggtgacctctgcggatcatggcagt
ttggctgaaaccctgatcattatcgctggcctgagtgtccaggacccccgggaacggccg
caggacaaacagcaggcggcggaccaggcgcatgccccgtttaacgataaagactcggat
tttgtgacgctgctgaatatctggaacttttatgaggagcagcgccaggaactgtcccat
aaccagatgaagaaagtctgccagaagagttttctgagctggatgcgcatgcgggaatgg
cgggatattcatcgccagctcaccctgatttgccgggaacaaaagctcacctttaacaag
gatgtcgccagttatgatgctgtgcataaggccattcttgccgggctccttgggcagata
gccgtcaaggtcgagaagaaagagtatctggctacgcgcaaccgcaaagtgatgattttc
cctggctccaaggtagccaaaacaggcccaaaatggattgtggcgacagagattgtcgaa
accagccgggtgtttgcgcgtatggtcgcggcaatccagccggagtggattgagcctctc
gcaggccatgtggtaaagcatcattttttcgaaccgcactgggaacagaagcgggctcag
gtcatgggttacgaaaaggtgaccctctacggccttgatgtggtgcccaaacgtcgcatt
ccctacagcaaggtagaccctgccgagtgccggaacctgtttataaggcgggccctggtg
gagggcgactaccgctcgaaagcgccgtttattgttcgtaaccgggagatgctggatacc
gtcgaaaatctggaaaagaaaacccggcgcagggatctgctggtagacgatgaagtgttg
gtcgaattttacgaccagcgtttaccaaccgacatcgtaagtgggcggcattttgaaacc
tggtggaaaggcctgtcgtcccaagagctgaaggctcttgaacttaccgaacaggacatc
cttcaaaggccggtggatgcgcaagctgcggaactctatccggattatctggagtgggag
ggcgtccgctacccactcagttacgagttcgaaccgaccagcgaacgggatggggtgacg
cttcaggttccgctgatggcgctcaggcagattccatcacggcgtctggagtggctcgtg
ccgggattgctgcgggaaaaatgcatagcgttagtaaaggggctgcccaaatccttgcgc
aggaatttcgtcccggtaccggattttgtcgacgcggcactggccaatatgcagccctcc
aatgagccactggcgcttcagctgggagaacaactccggcgcatgactggcgtgcggatt
gatccgcaggcctggcctgagtctgaattgcccagacatctgcgcatgaacctccgggta
atgggagatggcggcaaggtgatggcggaaagtcgggaaaccgatgagcttcagggacaa
ctggagggaaaagccgaggaggcgttggcgagcgcaaccagtgaaaacccggaaaatgaa
ctctcgggagagcataccgactggcaattcggagatttaccggagcaggtacaaaccgaa
aagggcggaatgaaggttactgtgtatcctgcactggaagaccttggcaaaaccgtttgt
cagattcgctgccttgaccggttgacggcagaggatacaactcgaaagggcgttgcccgg
ctgattctgaatcgctttggaaagactctggacgatctggacaggaagttgccccggttc
aggcagtcagccttgatgtttgcccccgtgggccaggcaaaggtactgctggatgatctg
gttctggcaaccgttatgacgcacttcctcggtgagtctgtgccgcggacgtctgatgat
tttgaccggttgtttgatcggcatcgtggagacttcattcctgcactggaagaagcagac
gagcgcttgtatcaggcaatgtctggctaccagaaggtcgcgaagcggctcaagggaaag
attaatctggcgcttgcgaacagcatggcggacctcaaattccagttgcagaatctggtt
tatcccggatttctggtggccacgccgccagaatggctagccgagttcgggcgttatttt
gaggcggcgctgatccggctggagaagatgccccgggaaatggggcgggagcgggaattc
ctgcacacaattgagggcttgtggtcccggtacgccagcaaacgggacgagcagcaacgc
caggggatacgcgatcccgagttgacggtatatcgctggatgctggaggagtaccgggtc
tctttcttcgcgcagcagttgggtaccgccatgaccgtttcgatcaagcgtctggacaaa
cagtgggaactcacccgggtctag
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