Marinobacter salinus: BKP64_11215
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Entry
BKP64_11215 CDS
T04766
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
msq
Marinobacter salinus
Pathway
msq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKP64_11215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msq03019
]
BKP64_11215
03016 Transfer RNA biogenesis [BR:
msq03016
]
BKP64_11215
Enzymes [BR:
msq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BKP64_11215
Messenger RNA biogenesis [BR:
msq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKP64_11215
Transfer RNA biogenesis [BR:
msq03016
]
Prokaryotic type
tRNA degradation factors
BKP64_11215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_HELZ2
WHD_RNase_R
CSD
Motif
Other DBs
NCBI-ProteinID:
AOY88696
UniProt:
A0A1D9GM23
LinkDB
All DBs
Position
complement(2416431..2418992)
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AA seq
853 aa
AA seq
DB search
MVSSKKDERDPHAGREAQKYDNPIQSREFIIAHLKERGAPATHETLCAELGQDSPEGIEA
LRRRLIAMCRDGQLICNRRGAYLPIEEADLVTGRVIGHKDGFGFLVPDDGGSDLFLTARQ
MRQVFHGDRVAARVDRVDDRGRREGVIVEVLEYRTSQTVGRFFQESGISFVVPENARINH
EILIPQENCGEARHGQYVVVDIVRQPSVRTQPLGKIVEVLGEHMAPGMEIDVAIRSYDIP
HSWPPAVGEQVAEIPEQVTEKDKENRVDIRNLRLVTIDDETARDFDDAVYCEPRPRGGYR
LLVAIADVSHYVRPGTPLDEEAVNRSTSVYFPDHVVPMLPEKLSNGLCSLNPGVDRLCMV
ADLTISAAGNISGYSFYQAVMYSHARLTYNKVSDMLEHPDSESGYRLSEQYAHVLPQLHN
LYGLYQLLRKARTERGAIDFETTETKIVFDADRKIEEIVPVTRNEAHKIIEECMLCANVA
TARFLKKHKLPALYRVHDGPSEERLNAVRLFLGELGLQLGGGDSPTSADYQALLSEIADR
SDANVIQTVMLRSLSQAVYSPEEGGHFGLGFAGYAHFTSPIRRYPDLIAHRAVKSVIHGE
QASKDVVTPPKTDSNLAEYPYDLPRMERLGEHTSMAERRADDATRDVMAWLKCEYLRDHV
GEDYDGVIAAVVPFGFFVELSGVYIEGLVHVSTLSGDYFHHDAAKHRLIGEHTAMSFRLG
DEVRVKVVRVGMEDRKIDLELISEPVHRQADRDALAVPKKADDRGKGKRGSNKGKPGTRE
KSDRKRSAPAGAKRPRKKPDSAAPAKSGKPASDANEPLSARDELVAQAAKLALKKDKKPG
KDAGAGKNRKSRK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggtttccagcaaaaaagatgaaagggacccgcacgccggtcgggaagcccagaagtac
gacaaccccatacaaagccgtgaattcattatcgctcacctgaaggagcgaggtgcgcct
gcgacccacgagacgctttgcgccgagcttgggcaggattcaccggaaggtattgaggcg
ctgcgtcgccgcttgattgccatgtgccgggacggtcaactgatttgtaaccgccggggc
gcttaccttcctattgaagaagcggacctggtaaccgggcgtgtgattggtcacaaggac
ggttttggctttctggtgccggatgacggcgggtccgatctctttctgaccgctcgccag
atgcgccaggtattccatggtgaccgcgtcgctgcccgggttgaccgtgtcgacgatcgt
gggcgccgtgaaggtgtgattgtcgaagtacttgaataccggaccagccagacagtcggt
cgctttttccaggagagtggcatcagcttcgttgtcccggagaacgccaggatcaaccat
gagatcctgattcctcaggagaattgcggcgaagcccgtcatgggcaatatgttgtggtg
gacatcgtccgccagccaagcgttcgcacccagcctctggggaaaattgtcgaggttctg
ggcgagcacatggcgccgggtatggaaatcgacgtcgcgattcgctcctacgacattcct
cacagctggccaccggcggtgggggagcaggttgcagaaatcccggaacaggtcactgaa
aaagacaaggaaaaccgggttgatatccgtaatctccggctggttacgattgacgatgaa
accgcccgcgactttgacgatgcggtttattgtgagccgaggccccgcgggggctatcgt
ttgctggttgcgatcgcggatgtgtcccattatgttcgtccgggtacgccgctcgacgaa
gaggcggtgaaccggagtacatcagtgtacttcccggaccacgtggttccgatgttgccg
gaaaagctttcaaacggcctctgttcgctgaaccccggcgttgaccgcttgtgcatggtg
gccgacttgaccatcagtgcggcgggtaatatcagcggctacagcttctatcaggcggtt
atgtacagccacgcacggctaacctataacaaggtgagcgacatgctggagcacccggat
tcggaatcgggttatcgtctgtccgagcaatacgcccatgtgctcccacagctgcacaat
ctttatggcctttatcagctgctgcgaaaggcgcggaccgagcgtggtgcgatcgacttc
gagaccacggaaacgaaaattgttttcgatgctgaccgaaagatcgaagagatcgttccg
gtaacccggaacgaagcccacaagattatcgaagagtgtatgttgtgcgcgaacgtggcc
actgccaggttcctcaagaagcacaagttgccggcactttaccgggtgcatgatggcccg
tccgaagagcgcctgaatgccgtcaggttgtttttgggagagctggggttgcagttgggt
ggtggcgacagccccacgtcggccgactatcaggcgttgctgtctgagatcgccgatcgc
tccgatgccaatgttatccagacggtcatgctgcgctcgctcagtcaggcggtgtatagc
ccggaggagggtggtcacttcggtctcgggtttgccggttatgcgcatttcacctcaccg
atccgtcgctatcctgatctgatcgcccaccgggcggtcaagtccgtgattcacggcgaa
caggcatcgaaggatgttgtgactccgccgaagaccgactccaatctggcggaataccct
tacgacctgccgcggatggagcgtttgggcgagcatacatccatggctgagcgaagggcg
gatgacgcaacccgtgacgtcatggcctggctcaagtgtgaatacctgcgtgatcacgtc
ggggaagactacgacggtgtgattgccgcggttgttccctttggtttctttgttgagctg
tccggtgtttacattgaggggctggtccatgtctccaccctgagtggggactacttccac
catgacgccgccaagcaccgcctgattggcgagcacacagccatgagcttccggttgggg
gatgaggttcgggtcaaggtcgtccgggtcggcatggaggatcgcaagatcgatctggaa
ctgatcagtgagcctgtgcatcgtcaggctgaccgcgacgcgctggcagtgcctaaaaaa
gccgacgaccgggggaaaggtaagcgcggaagcaacaaaggtaagcctggaacacgggag
aagtccgatcgtaaacggagcgcgccggccggcgccaagcggccccggaaaaagcccgac
tcggccgcgccggcaaagtccggcaagccggccagcgatgctaatgagccgctttccgcc
agagacgaactggtcgcccaggctgcgaaacttgcccttaaaaaggacaagaagcccggt
aaggacgccggagccggcaagaaccgaaaatcccgcaagtaa
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