Marinobacter salinus: BKP64_11400
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Entry
BKP64_11400 CDS
T04766
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msq
Marinobacter salinus
Pathway
msq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKP64_11400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msq03019
]
BKP64_11400
03009 Ribosome biogenesis [BR:
msq03009
]
BKP64_11400
Enzymes [BR:
msq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKP64_11400
Messenger RNA biogenesis [BR:
msq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKP64_11400
Ribosome biogenesis [BR:
msq03009
]
Prokaryotic type
rRNA helicases
BKP64_11400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOY88729
UniProt:
A0A1D9GM98
LinkDB
All DBs
Position
2455066..2456577
Genome browser
AA seq
503 aa
AA seq
DB search
MSELSFAELGLDPAVLEAVTAVGYEKPSPIQAQAIPALLAGNHLLGVAQTGTGKTAAFAL
PLLSRIDASVSEPQILVLAPTRELAIQVAEAFTTYASKFRHFHVLPIYGGQDFYPQIKGL
RRGAQVIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPENCQ
RALFSATMPPQIKKVAQTYLRNATEVKIESETRTVERISQFVLPVYAERKLDALTRILEV
EPIDAAIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIVAT
DVAARGLDVSRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTPRERSWLRTLER
ATNSPMEAYELPSPVELKKMREQQFETQLLGFAEDRKLAKAMSLLDEIAERNEMDMAMVA
GALACWMEAAQPGSLPLEQPEALPTVSSTPPRRDRKGGGGRPGENRKGPKGGFKKGGPKG
RSGPGKPPGKGGKPAGKRPPRQA
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattgtcctttgccgaactgggtctggatccagccgtacttgaagccgtgacc
gccgttggctacgaaaaaccatcacctatccaggctcaggccatcccggcactgctggct
ggcaaccaccttctgggcgttgcccagactggcaccggtaagactgccgccttcgcgctg
cctctgctgagccggattgatgcctctgtcagcgaaccccagattctggtgctggcaccc
acacgtgagctggccattcaagtggctgaagcttttaccacctatgccagcaagttccgc
catttccatgtactgccaatttacggcggccaggatttctacccgcagatcaagggcctg
agacgcggtgcccaggtaatcgtcggtacacccggacgaatgctcgaccatctgcgcaaa
ggcacactgaaactcgacagcctcaaagcactggtgctggacgaggcggacgaaatgctc
cgcatgggctttattgacgatgttgaagccattctggccaaaacgccggaaaactgtcag
cgcgccctgttctcagccaccatgccgccgcagatcaagaaggtcgcccaaacctatctg
cgtaacgcgactgaagtgaaaatcgagagcgagactcgcactgttgagcgaatttcacag
ttcgtgttgcccgtttatgccgagcgcaaactggacgccctgacccgtatcctggaagtt
gagccgattgatgccgccattatcttcgtgcgcaccaaagccgaaactaccatgctggcc
gaaaagctgtcggctcgcggccatgccgttgcgcccctgagtggcgaccttaaccagcgc
cagcgcgaacagaccgttgaagatctgaagcgtggcaagaaagatattattgttgccacc
gatgttgctgcgcgcggtctggacgtgtcccgtatcacgcacgtcatcaactatgacgtt
ccctacgacaccgaggcgtacatccaccgggttggccgcaccggccgcgctggtcgtgaa
ggcaaggcgatcctgctggtaacaccccgcgagcgcagctggctgagaactctcgagcga
gccacgaactcgcccatggaagcctacgagttgccgtcccctgtcgaactcaaaaaaatg
cgggaacagcagttcgaaacccagcttctgggttttgcggaagaccgtaagctggccaag
gccatgtcgttgctggatgaaattgccgagcggaacgagatggatatggcaatggtagcc
ggtgccctcgcttgctggatggaagcggcccagccaggctccctgcctttggaacagcct
gaggcactgcccacggtatcttccacaccgccccgccgtgaccgtaaaggtggtggcggt
cggcccggagagaaccgcaaaggcccgaaaggtggcttcaagaaaggtggcccgaagggc
cgcagcggccccggaaagcctcccggcaagggtggcaagcccgccggtaagcgaccgcct
cgtcaggcttaa
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