Mycoplasma suis Illinois: MSU_0700
Help
Entry
MSU_0700 CDS
T01438
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
mss
Mycoplasma suis Illinois
Pathway
mss03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mss00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSU_0700 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mss03021
]
MSU_0700 (rpoC)
03400 DNA repair and recombination proteins [BR:
mss03400
]
MSU_0700 (rpoC)
Enzymes [BR:
mss01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSU_0700 (rpoC)
Transcription machinery [BR:
mss03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSU_0700 (rpoC)
DNA repair and recombination proteins [BR:
mss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSU_0700 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb1_4
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADX98231
UniProt:
F0QRW1
LinkDB
All DBs
Position
complement(566065..573996)
Genome browser
AA seq
2643 aa
AA seq
DB search
MSYKLKEVNSVVKRIDFSKYPTADWSLPNLRGIQIDSYKKFLESGIQELISKYFPITSAS
GNTQVFLDGIEITEVDVTEEEAVNSSKSYQRSIYLKLRLVSKYSEGKSKLSTSRIFFGNM
PIFSSSSNFIINGIEKFVICQIVRSPGLYVLNKAQIRLSNSRKRTQEGIVCELLPVKGVL
LLFHLPNPSDKKDGGEESTSIKLIARNTSGNNAYSFPVTVFLKALGISTKTITSLFEKNP
ELMRAFSQESFNPSGALNDSLVVSILSEISSAKGAQKMRDLSKGWIRETLYSLCMRYTEA
EREGASRAVKEDILEKIAIELAAKQLISSFSINTEIARREIHSYQELLWSYFYDKNYYHI
LPAGRYKLNYKLSVWERMRNKYLAQDICDLSGSVVFAKDTFMDFEKLSEFKEAAIAKKLN
IRHKFDITRTFDDIEGRYRDFDVIEYEKVSIYSGGLDSEVITLLGTPYLEDEKPLNPSDA
LAIISYMLHLKKKVGEYDDIDNLGNKRLKLIDELLKDRIAIALTRIQKFSVDRMNSLESK
LSYFSLQDGELEDYFSLSSIMNTKPFQIVIKEFFNSHQLVQFLDQQNVLSEITNKRKISA
MGPGGIKREDPNLSIRDVHYSYYGRVCPIETPEGMNIGLIMALASLSRVDKYGFLNTPYY
RVKNGVIQKDQKVWLNSIQERSFCIAEATTERDENGRLIGPVTVRRDEEVESVDPEEVSY
IDVDCTQITSISTSLIPFLEHDDANRALMGANMQRQAVPLISPKSPIVATGVESRIARDS
GVVIQAEDDGIITYMDSSQIRVKYRGELGEKTYSLQKFIKTNQNTCKNQLVVPRNSREVK
KGDILVDGHAIQNGELALGQNILVAFTSWYGYNYEDAIILSSRLVQENVYTSLHIQEYTV
NCMRTKIGDEEITRFIPGCTAEEKKYLDEDGVILVGAAVKEGDILVGKTSPKAMGEVTPE
EKLLQAIFSEKAKSVKDSSLRLPSGSEGIVTKILRYSAAKGDRLGDDVLETIKIFVTSKR
NIQIGDKMVGRHGNKGIVSKVVPVEDMPYLEDGTAVDILLNPLGVPSRMNIGQILESYLA
FSARKLVFKKILEAFFDSSLESCDTLFSRSKVELESLGKVIKSYLESKNIKSREEALSKL
TQLDFSIILSHAGIKYDELEIKVLTPIFAGCKNSDLINIMADAGVDFKHHNGRFTLYDGR
TGEKFKDPISVGIIYMLKLDHMVDDKIYARSVGPYSKITQQPLGGKCQNGGQRFGEMEVW
ALEAYGAAHNLRELLSLKSDDIQARNLIYYSIIKGQALPKPTISESFKLLVKKLQALGLR
VNISFGAAREVLGFDDYLARRMKLNEKIQLMSWNNQSVREDQEKYKLGDSNFAQESELED
LTINGFQVSITSPEYLLSLSRGEVKSAETINYKTFKPEKGGLFCEAIFGPVKDYECFCGK
YKRVRYKGKYCEKCGVCITESIVRREWMGHIALACPIAHIWMIKELPLPSKVSLILGIKY
KSVEEVVYFVNYIVIEIKNSENKRYSGIFERLELVNVSDQNSPLRSLFKIRKLLRLIYEE
IAEKEGTDSVSYEQGRVYYKALSSSNLPFSLHDVFEYIYKWSGIKIGTGAEAIYELLKKV
DLDSLEHSILKQLEGRKKEVSSSNEPKYKKLLSRLEVVRWFKQSGNRPEWMILKNILVLP
PNLRPIVQLDAGRFTTSDLNIFYRRIIIRNERLKKILSLNVTSIIANNEKRMLQEAVDSL
IDNSSRKKPLLAKDKHPLKSLTDHLKGKQGLFRQNLLGKRVDYSGRSVVVVGPELKLHQV
GLPILIVLKLFKPFIIRELIRSYIDEETGERVQIAQNIKVAEKIIEDQEDVLWPVVQKVI
KERPVLLNRAPTLHSLGIQAFEPIIVEGKAICLHPLVTTAFNADFDGDQMAVHLPLSEEA
VKEARDILLAPHHVLAPKNGQPILMPSQDMVLGLYYLTNTRKGAKGEGRLCSSVEEVKYL
YEIGEIDLNAFILVGTSIFSNKKWNKKGLLITTPGKVIFNLALPSDYRYVNDSSEEGVSE
EDIVELGVDYTEVVANIKEKAPFSKKVMQTIIEEVYEGYPLEKTSEMLDNIKTLGFEFST
KSCITISPFDIPRFKDSFKEDLIVEAEKKVREQKEFFELGMITDDERYQRVINLWSEVKD
KVSEQVKSWFRGEEYRDNPMAIMEKSGARGSLSNFVQLSGMRGLMNRSYNYGQSNDSKII
KDIIEVPIKNSFIEGLNIIEFFNSSYGSRKSMADTAVKTAKSGYMTRKLVDASQEVVVRS
IDCNPKKGVLIRAIKAEGSDSMVKTLEERLRYRCAFKDIVCPQTGEVLCAEGEYITPKIA
KKIQDLGFEEVEVRGAFTCEQKRGVCQKCFGYDLKTKKPVKVGTAVGIIAAQSIGEPATQ
LTMRTFHSGGVAGESNITQGFERLRQLFDGIKPHSWEQAIISDIKGVVKSIVRRGNSRII
EIKGPLGKRVYEVGMAIKVRVQVGEEVNVGTLITEGLLSLDEIKRSLGIEKTRTYMVEEV
LKVYWMHGLDLSDKYVEVIVNQMTNKWKVLESTNTKVSVGEILEGENFKNRIDNIIIEKE
EMPVAEIEVLNLEDVPMRSGSFLAAAAFQDTRKVLTDAAVKGEQDSIMSLKSNLIVGELI
GLK
NT seq
7932 nt
NT seq
+upstream
nt +downstream
nt
atgagttacaagttaaaagaggtaaattctgtagtaaagagaattgacttctctaagtat
cctacagctgattggtctctaccaaaccttagaggaatccaaattgattcctataagaag
ttccttgaaagtggaattcaagaacttatttcaaaatacttccctattacatcagcttct
ggaaatacacaagtattcctagatggaatagaaataacagaagttgatgtaacagaagaa
gaagctgttaatagctctaagagctatcaacgatctatatatctaaaacttagattagtt
tctaagtatagtgaaggaaagagtaagctatctacctcaagaatcttctttggtaatatg
cctatcttctcttcatcttccaatttcattattaatggaattgaaaagtttgtaatctgt
caaattgtaagatcgccaggtctatatgtgcttaataaagcacaaataagactttcaaat
tctagaaagagaactcaagaaggaatagtttgcgaacttcttccagttaagggagttctt
ctattattccatcttcctaatccttctgataagaaagatggaggagaagaatccacttca
attaagttaattgcaagaaatacttcaggtaataatgcttactcattccctgtaacagta
ttcctgaaagctcttggtatttcaacaaagacaattacgtctttgtttgaaaagaatcca
gagcttatgagagctttctcacaagaaagctttaatccttcaggagcacttaatgattct
cttgttgtatctattctttctgaaatctcaagtgctaagggagcacaaaaaatgagagat
ctatctaagggatgaattagagaaactctttactctctgtgtatgagatacacagaagct
gaaagagaaggagcttctagagctgtaaaagaagatattcttgagaagatagctattgaa
ttggctgcaaagcaattaattagctccttctcaattaatacagaaattgctagaagagaa
attcactcctatcaagaattactgtggtcatacttctatgacaagaattattaccacatt
cttccagcaggaagatacaaacttaactacaaactttctgtatgagaaagaatgagaaac
aaatatcttgctcaagatatttgtgacttatcaggtagtgttgtttttgcaaaggacaca
tttatggactttgaaaaactatctgaattcaaagaagcagctattgctaagaaactaaat
attagacataagttcgatatcaccagaacatttgatgatatcgaaggaagatatagagat
ttcgatgtaatcgaatatgaaaaagtatctatttactcaggaggactagatagtgaggtt
attacccttctaggtactccttacctagaagatgaaaaacctctaaatccttctgatgct
ctagctattatctcctacatgcttcacctaaagaagaaagtaggagaatatgatgacatc
gataacttaggtaataagagacttaagttaatcgatgaattacttaaggacagaatagct
atagctctaacaagaattcaaaaattctctgtagatagaatgaatagcttagagtctaag
ctaagctacttctctcttcaagatggagagctagaagactacttctctttgagttctatt
atgaacacaaagcctttccaaatagtaattaaagaattctttaattctcaccaattggtc
caattcttggaccaacaaaatgttctttctgaaattactaataagagaaagatttctgct
atgggtcctggaggtatcaagagagaagaccctaacttaagtattagagacgtacactac
tcttactacggaagagtgtgtcctattgaaactccagaaggtatgaatattggacttatt
atggcacttgcttctctttcaagagtagacaagtatggtttcttgaatactccatactac
agagttaagaatggagttattcaaaaagatcaaaaagtttgattgaactctattcaagaa
agaagtttctgtatagcagaagctactacagaaagagatgaaaacggaagacttattggt
cctgtaacagtaagaagagatgaagaagtggaatctgtggatccagaagaagttagttac
atagatgtagactgtacacagattacatctatttctacatctttaattccattcttggaa
catgacgatgcaaacagagctctgatgggagctaacatgcaacgtcaagctgttccactt
attagtcctaagtctccaattgtagctactggagtagaaagtagaatagctagagactca
ggagtagttatccaagcagaagatgatggaatcatcacctacatggatagctctcaaata
agagttaagtatagaggagaactaggtgaaaaaacatatagtcttcaaaaattcataaag
actaaccaaaacacatgtaagaaccaactagtagttcctagaaactctagagaagttaag
aagggagacatactagtagatggacatgctatccaaaatggagagctagctctaggtcaa
aacatacttgtagcctttacctcttggtatggctacaactatgaggatgctatcatccta
tcttctagactagttcaagagaatgtatatacatctcttcacatccaagaatatacagtg
aactgtatgagaaccaagataggtgatgaagaaattacaagattcattcctggatgtact
gcagaagaaaagaaatatctagatgaagatggagttattctagtaggtgctgcagttaaa
gaaggagacatcttagtaggtaagacttctcctaaggcaatgggagaagtaactccagaa
gaaaaattgcttcaagcaattttctctgaaaaagctaagagcgtaaaagattcatctcta
agactaccttcaggatctgaaggtatcgttacaaagatacttcgatactctgcagctaag
ggagacagactaggagatgatgttttggaaactataaagatctttgttacctcaaagaga
aatatccaaattggtgacaagatggtaggtagacacggtaacaaaggtatagtttccaaa
gttgttcctgtagaagatatgccttacctagaggatggtacagctgtagacatcctacta
aaccctctaggtgttccttcaagaatgaacattggtcaaattcttgaaagctatctagca
ttctctgctagaaagctagtattcaagaagattctagaagcattctttgactctagtcta
gaatcatgtgatactctattctctagatctaaggtagaacttgaatcacttggaaaagtg
attaagtcctacctagaaagtaagaatataaagagcagagaagaagctctttctaagtta
actcaactagacttctcaatcatactttcacatgctggtattaagtatgatgaactagaa
attaaagtattaactcctatttttgctggttgcaaaaatagtgacttaataaatatcatg
gctgatgctggagtggacttcaagcatcacaatggtagattcacactgtacgatggtcga
acaggtgaaaaattcaaagatccaatttctgtaggtattatctacatgctgaaattggat
cacatggttgatgacaagatatatgctagatcagttggaccttactccaagattactcaa
caaccattaggtggtaagtgtcaaaatggtggtcaaagatttggggaaatggaagtatga
gcacttgaagcttatggagctgcccacaacttaagagaacttctttctcttaagtcagat
gacatccaagctagaaacttgatctactactcaattattaagggtcaagcacttccaaag
cctacaatttctgagtccttcaagcttcttgttaagaagcttcaagctctaggacttaga
gtaaatataagctttggagctgcaagagaagtattaggatttgatgactatcttgctaga
agaatgaagttgaatgaaaagattcaacttatgagttgaaataaccaatctgtaagagaa
gatcaagagaagtacaagctaggagattctaacttcgctcaagagagcgaactagaagac
ctaacaattaatggtttccaagtaagtattacttctcccgaataccttctatctctatct
agaggagaagttaagtcagcagaaacaattaattacaaaacattcaaaccagaaaagggt
ggacttttctgtgaagcaatctttggtcctgttaaggactatgaatgtttctgtggaaag
tataagagagttagatataagggtaaatactgtgaaaagtgtggagtatgtatcacagaa
tcaatagttagaagagagtgaatgggacatattgcacttgcatgtccaattgcacacatc
tgaatgatcaaagagctacctttgccatcaaaggtatctctaatacttggtattaagtac
aagagtgtagaagaagtagtttatttcgttaactacatagttatcgaaataaagaactca
gaaaataagagatattctggtatctttgaaagactagaactagttaatgtttctgatcaa
aatagtcctctgagatctctattcaagattagaaagcttctgcgtctaatctatgaagaa
atagctgaaaaggaaggaacagattctgtttcctatgaacaaggaagagtgtattacaaa
gctctttcttcatctaaccttcctttctcacttcacgatgtatttgaatacatctacaag
tgaagtggtatcaagataggtacaggtgctgaagctatctatgaactacttaagaaagta
gatctagattcacttgaacactctattctaaaacaacttgaaggtagaaagaaagaagtt
tcttcaagtaatgaacctaagtacaagaaacttctttctagactagaagttgttagatga
ttcaaacaatctggtaatagaccagaatgaatgattctgaagaacattcttgttcttcct
ccaaacttaagacctatagttcaattagatgctggtagatttactaccagcgatctaaat
atcttctatagaagaatcattattagaaatgaaagacttaagaagatcttaagtctaaat
gtaacttcaattatcgctaataatgaaaagagaatgttacaggaagctgtagattctcta
attgataactcaagtagaaagaagcctctattagctaaggacaagcacccgcttaagtcc
ctaactgatcacctaaaaggtaagcaaggtctcttcagacaaaacctacttggtaagaga
gtagactactctggtagatctgttgtggtagtaggacctgaactaaaacttcaccaagta
ggtcttcctatcttgattgtcttgaagttattcaagccattcataataagagaacttatt
agaagttatatagatgaagaaacaggcgaaagagttcaaattgcacagaacatcaaagta
gctgaaaagatcattgaagatcaagaagatgttctgtgacctgtagttcaaaaggtaatt
aaagaaagacctgttcttctaaacagagctcctactcttcacagcttgggtatccaagct
tttgaacctattattgtggaaggtaaagctatttgtctccaccctctagtaactactgcg
ttcaacgcagactttgacggagaccaaatggcagtacaccttccactatctgaagaagca
gttaaggaagctagagatattcttctagcccctcaccatgtattggcacctaagaatggt
caaccaatcttgatgccttctcaagacatggtattaggtctttactacctaactaataca
agaaaaggagcaaagggagaaggaagactttgctcctcagtagaagaagtgaagtaccta
tacgaaataggagaaatagacttaaatgcattcattcttgtaggtacttctatcttcagc
aataagaagtgaaataagaaggggcttcttattaccactccaggtaaggtaatctttaac
ctagctctaccttctgattacagatatgtaaatgactcttcagaagaaggagtttctgaa
gaagacattgtagagctaggagtagattacactgaagtggttgcaaatattaaggagaaa
gctcctttcagtaagaaagtaatgcaaaccatcatagaagaagtctatgaaggttatcca
ctagaaaaaacatccgagatgttagataatatcaagactctaggattcgagttctctaca
aagtcttgcatcactatctctccatttgatattcctagattcaaagattcctttaaggaa
gatttgatagttgaagctgaaaagaaagtaagagaacaaaaggaattctttgaattagga
atgattactgatgatgaaagatatcaaagagtaatcaatctttgaagtgaagttaaggat
aaagtatctgaacaagttaagagctggttcagaggagaagaatatagagataatccaatg
gctatcatggaaaaatctggagctagaggtagcttgtcaaactttgtccaactatcaggt
atgagaggacttatgaatagatcctataactatggacaaagtaatgactccaagataatt
aaggacatcatagaagttcctattaagaactccttcatagaaggtcttaatataattgaa
ttcttcaactcttcctatggatctagaaagagtatggctgacacagcagtgaaaactgct
aagtcaggttacatgactagaaaacttgtggatgcttcacaagaagtagtagttagatcc
atagactgtaatcctaagaagggagtcttaataagagctattaaggctgagggaagtgac
agtatggttaagactcttgaagagagacttagatatagatgtgcgtttaaggacattgta
tgtcctcaaacaggagaagtactgtgtgctgaaggagaatacattactcctaagatagct
aagaaaatacaagatcttggattcgaagaagtagaagtgagaggagcatttacttgtgaa
caaaaacgaggtgtttgtcaaaaatgtttcggttacgaccttaagactaagaaaccagtt
aaggtcggaactgctgtcggaataattgcagctcaatcaattggtgagcctgcaacacaa
cttaccatgagaacattccactctggtggtgttgcaggtgaatccaacattactcaaggg
tttgagagactaagacaactatttgatggaattaaacctcactcttgagaacaagcaata
atctcagatattaagggagttgttaagtctattgttcgaagaggaaactctcgaataata
gaaattaaaggacctcttggaaagagagtttatgaagttggaatggctattaaggttaga
gtacaagttggagaagaagttaatgttggtactctaataactgaaggtcttctaagtcta
gacgaaattaagagaagtctaggtattgaaaagactagaacttatatggttgaagaagtt
ctgaaggtttactgaatgcatggtctagacttatcagacaagtatgttgaagttatagta
aatcaaatgactaataagtgaaaagttctagagtcaaccaacactaaagtcagtgttggt
gaaattctagaaggtgaaaacttcaagaatagaattgataatataattatcgaaaaggaa
gaaatgccagtagctgaaatagaagttctaaacttggaggatgttccaatgagatcagga
tcattcctagcagctgctgcgttccaagacactagaaaggtcttgactgatgcagctgtt
aagggagaacaagacagcatcatgtctctaaaatccaatctaattgttggggaattaata
ggattgaagtag
DBGET
integrated database retrieval system
