Methanosphaera stadtmanae: Msp_1084
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Entry
Msp_1084 CDS
T00313
Symbol
cdcH
Name
(GenBank) CdcH
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mst
Methanosphaera stadtmanae
Pathway
mst04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Msp_1084 (cdcH)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mst03019
]
Msp_1084 (cdcH)
03009 Ribosome biogenesis [BR:
mst03009
]
Msp_1084 (cdcH)
04131 Membrane trafficking [BR:
mst04131
]
Msp_1084 (cdcH)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mst04147
]
Msp_1084 (cdcH)
Messenger RNA biogenesis [BR:
mst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Msp_1084 (cdcH)
Ribosome biogenesis [BR:
mst03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Msp_1084 (cdcH)
Membrane trafficking [BR:
mst04131
]
SNARE
SNARE associated proteins
Others
Msp_1084 (cdcH)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Msp_1084 (cdcH)
Exosome [BR:
mst04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Msp_1084 (cdcH)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_2
AAA_14
CDC48_2
AAA_22
TIP49
AAA_33
AAA_5
nSTAND3
NPHP3_N
AAA_28
AAA_3
AAA_18
AAA_lid_PRS2_C
AAA_7
Sigma54_activat
DUF815
ABC_tran
Zeta_toxin
RNA_helicase
Mg_chelatase
ATPase
SLFN-g3_helicase
AAA_17
IstB_IS21
NB-ARC
nSTAND_NTPase5
TsaE
Viral_helicase1
AAA_30
Parvo_NS1
PhoH
AAA_24
NACHT
ResIII
NTPase_1
bpMoxR
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ABC57467
UniProt:
Q2NFD6
LinkDB
All DBs
Position
1224585..1226777
Genome browser
AA seq
730 aa
AA seq
DB search
MTDELKLKVAEAFSQGDIGRSIARIDPKCMDELNLKDGDIIEIEGNKITTATVVESKSDV
SLGILRIDSYLRKNAGTSIGEEVTIRPATIKEAKKVKLAPVDQEIAIQGNLNSVFLNRTV
NKGDIIITGVRKQQPKTSSMMFDDLINQMMSNMASIGEIKLAVVNTKPLGPVKITENTQI
EMETKPVDPSKFEGVENLIDVSYEDIGGLKNEVKKIREMVEIPLKRPELFKQLGISAPKG
VLLHGPPGTGKTLLAKAVANETNAHFIVINGPEIMSKYVGGSEEQLRELFEEAEENSPSI
IFIDELDAIAPKREEVSGDVERRTVAQLLTLMDGLKSRGEVVVIGATNRPDAIDAALRRP
GRFDREIEIGVPDKEERKEILEVHTRHMPLDDDVNLDELTEVTHGFVGADLEALCKEAAM
RVLRRILPEIQTDKEVPQEVLEKMVLHKKDFKNALKEIQPSALREVLVQIPDVNWDDVGG
LDDAKQELKEAIEWPLKNPEKFKEFGINPPKGVLLTGVPGTGKTLLAKAVANESDANFIS
VKGPELLSKWVGDSEKGIREVFRKARQTAPTVIFFDEIDAIASTRGYSAGDSGVTQRVVN
QLLTEMDGMEELHDISVIAATNRKDIIDPALLRPGRFDRHVEVGLPDEESRESIFKVHTK
NMPLSDDVDIHTLAKEAEGFVGADIEAVCREAVMLTLRKNLEANIVHMSEFEEAMKKVKP
TKDSELVSYN
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgactgatgaattaaaattaaaagttgctgaagcattctctcaaggagatattggaaga
tcaatagcaagaatagatccaaaatgtatggatgaattaaatctaaaagatggagacatc
attgaaattgaaggaaataaaatcactactgcaacagtagtagaatcaaaatcagatgta
agtctaggaattctaagaatagatagttatcttagaaaaaatgcaggaacatccatagga
gaagaagtaacaatcagacctgcaactataaaagaagctaaaaaagttaaattagcgcca
gtagatcaagaaattgcaatacaaggaaatttaaactcagtattcctaaatagaacagta
aacaaaggagacattatcataactggtgttagaaaacaacaaccaaaaacatcaagtatg
atgtttgacgaccttataaatcaaatgatgtccaatatggcatcaattggtgaaatcaaa
cttgcagtagtaaatacaaaaccactgggtcctgtaaaaatcacagaaaatacccaaatt
gaaatggaaacaaaaccagtagaccctagtaagttcgaaggagttgaaaacctaatagat
gtatcctatgaagatattggtggattaaaaaatgaagttaaaaaaataagagaaatggta
gaaattccactaaaaagaccagagttattcaaacaattaggaatttcagcaccaaaagga
gtattactccatggaccgcctggaactggtaaaacattactagcaaaagctgtggcaaat
gaaacaaatgcccacttcatagtaattaatggaccagaaatcatgagtaaatacgttgga
ggatcagaagaacaattaagagaactctttgaagaagcagaagaaaacagtccttccatc
atattcatagatgaactagatgcaattgcaccaaaaagagaagaagtatcaggagatgta
gaacgtagaacagtagcccaattactaacacttatggatggacttaaaagtagaggagaa
gtagtagtaattggagcaaccaacagacctgatgcaattgatgcagcattaagaagacct
ggaagatttgacagagaaatagaaattggagttccagataaagaagaaagaaaagaaatt
cttgaagtacatacaagacatatgccacttgatgatgatgtaaatcttgatgaattaaca
gaagtaacacatggatttgtaggagccgaccttgaagcactatgtaaagaagcagcaatg
agagttctaagaagaatacttccagaaatacagacagacaaagaagtaccacaagaagta
cttgaaaaaatggtactacataaaaaagatttcaaaaatgcactaaaagaaatacaacca
tcagcactaagagaagtacttgtacaaataccagatgtaaattgggatgatgtaggtgga
ttagatgatgcaaaacaagaactaaaagaagcaattgaatggccactaaaaaatcctgaa
aaattcaaagaatttggaattaacccaccaaaaggtgttctactaactggagttccagga
actggtaaaacattactagcaaaagctgtagcaaatgaaagtgatgctaacttcatatct
gtaaaaggaccagaactattatctaaatgggttggagattctgaaaaaggaataagagaa
gtatttagaaaagcaagacaaacagcaccaacagtaatattctttgatgaaattgatgca
atagcatcaacaagaggatactcagctggagatagtggtgtaacacaaagagttgtaaat
caacttcttactgaaatggatggaatggaagaattacatgacatatcagttatagctgca
actaaccgtaaagacattatagacccagcattactaagaccgggaagatttgacagacat
gttgaagtaggtcttccagatgaagaatcaagagaatcaatattcaaagtacatacaaag
aatatgccattatcagatgatgttgacatacacacactcgcaaaagaagctgaaggattt
gtaggagcagatattgaagctgtatgccgtgaagctgtaatgttaacattaagaaaaaat
cttgaagcaaatattgtacacatgtctgaatttgaagaagcaatgaaaaaagtaaaacca
acaaaagacagtgaacttgtttcatacaactaa
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