Methanosphaera stadtmanae: Msp_1086
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Entry
Msp_1086 CDS
T00313
Symbol
fen
Name
(GenBank) flap structure-specific endonuclease
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
mst
Methanosphaera stadtmanae
Pathway
mst03030
DNA replication
mst03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Msp_1086 (fen)
03410 Base excision repair
Msp_1086 (fen)
03450 Non-homologous end-joining
Msp_1086 (fen)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mst03032
]
Msp_1086 (fen)
03400 DNA repair and recombination proteins [BR:
mst03400
]
Msp_1086 (fen)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mst04147
]
Msp_1086 (fen)
DNA replication proteins [BR:
mst03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
Msp_1086 (fen)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
Msp_1086 (fen)
DNA repair and recombination proteins [BR:
mst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Msp_1086 (fen)
Exosome [BR:
mst04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Msp_1086 (fen)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ABC57469
UniProt:
Q2NFD4
LinkDB
All DBs
Position
complement(1228230..1229216)
Genome browser
AA seq
328 aa
AA seq
DB search
MGVKFKDITNPEPIEMKELEGKILTVDASNVIYKFLSSMRQTDGTPLRDLNGHITSHLNG
IMFQTSTLIEKDIKPVYVFDGKAPDLKKETQEERINIKKESEKKYLEAKEVGDVVAARKY
AARTTHLNKEIIKSSKKLLDLMGIPYVQARTEGEAQASYMVSQNDAWAVVSQDYDCLQFG
ATRMIRNLKLSKSNSKNLELISLEKTLKELNLTREQLVDVAMLVGTDFNKGVYGIGAKKG
IKLIHKYGTLEKALESLNETMEVDAELIREIFLNPNVVHNYTIEFKRPKKSQLLDFLCGE
HDFDERRTISAIKKLQAKTAQSSLEDWF
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaaaatttaaagatattacaaatccagaacctatagaaatgaaagaattagaa
ggaaaaattttaacagttgatgcttcaaatgtaatctataaattcttatcaagtatgaga
caaactgatggaacaccactacgagacctgaatggacatataacatcacacctaaatggt
ataatgtttcaaacatcaacactaattgaaaaggatataaaaccagtgtatgttttcgat
ggaaaagcaccagatttaaaaaaagaaacacaagaagaaagaataaatattaaaaaggaa
tctgaaaagaaatatctggaagctaaagaagttggtgatgtagtagctgcaagaaaatat
gctgcaagaacaacacatctaaataaggaaattataaaatcttctaaaaaattattagat
ttaatgggaataccttatgtacaagcaagaactgaaggagaagcacaagcttcctatatg
gtttcacaaaatgatgcatgggcagtagtatcacaagattatgattgtctacaatttggt
gcaacacgtatgattagaaaccttaaattatctaaaagtaattctaaaaatttagaacta
atttctctagaaaaaacattaaaggaattgaatcttacaagagaacaattagttgatgtt
gcaatgcttgttggaacagactttaataagggagtatatggtattggtgcgaaaaaagga
attaaattaattcataaatatggtacattagaaaaagcattagaatcattaaatgaaaca
atggaggttgatgctgaattaattagagaaatatttttaaatccaaacgttgttcataat
tatactattgaatttaagcgtccaaaaaaaagtcaattacttgattttctatgtggagaa
catgattttgatgaaagacgaacaataagtgcaattaaaaaattacaagcaaaaacagca
cagtcaagtcttgaagattggttttaa
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