Methanosphaera stadtmanae: Msp_1228
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Entry
Msp_1228 CDS
T00313
Name
(GenBank) predicted helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mst
Methanosphaera stadtmanae
Pathway
mst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msp_1228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mst03019
]
Msp_1228
03009 Ribosome biogenesis [BR:
mst03009
]
Msp_1228
Enzymes [BR:
mst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Msp_1228
Messenger RNA biogenesis [BR:
mst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Msp_1228
Ribosome biogenesis [BR:
mst03009
]
Prokaryotic type
rRNA helicases
Msp_1228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABC57606
UniProt:
Q2NEZ7
LinkDB
All DBs
Position
1398810..1400561
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AA seq
583 aa
AA seq
DB search
MEKLKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGI
PLLENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKAL
QKGVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQ
FLLFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDL
HDFDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVAT
DVAARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQR
YAKTKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIEKLVEEDYNSIDIAA
TLLKGVIDDKRYKEEEFGDTEAHEGFVRFFMSVGRKQNITISVILNSIYEKTGLTGHQIG
NIDIFDNFSFVEIPKANASDFYRFMGDTYIENKRAHIEPARPRDKSKKNNTRNNNRNFNK
KRGRKSKKFNPHRNDYHQKDSYRKDTYRKESKFRKDNYGNESY
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattaaaatttaaagacttaaatatatctcccgaaatacaaaaagcagttgca
gatatgggttttgaagaagcatcacctattcaatcattagcaatacctcaaatattagcc
cataaagatgttactggtcaagctcaaactggaactggtaaaactgctgcatttggaata
ccattacttgaaaatatagatagtgaagataataatttacaagcaattattttatgtcct
acacgtgaattagcaatacaagtagcagaagaattaagaaaattatctgtttaccttcct
aaaatagatgtacttccagtttatggtggtcaaccaatagatagacaaattaaagcatta
caaaaaggtgttcaaataataataggtacaccaggacgtgtaatggatcatattgatagg
ggaactttaagtttaaataacattaaaacagtaatcttagatgaagctgatgaaatgtta
gatatgggttttagagaagatattgaatatattttagaagatatcccatatgaaagacaa
ttcctattattctctgcaacattacctcaagaaatacttcaattagcacagagataccag
acaaatccagagattgttaaggttacaaaacatgaattaacaacacctgatgttgaacag
aaatattttgaagttaaagaagatatgaaacttgaactattatctagattattagattta
catgattttgatttatcattagtattttgtaatacaaaaagaaaagttgataaacttgta
agtcaccttcaaataagaggataccttgcagatggattacatggcgatcttacacaaaat
caaagagatcgagtaatgagtaaatttaaaaagggaaatatcgaaatattggttgcaaca
gatgttgctgctagaggtattgatgttggtggtgttgaagcagtatttaactttgatata
ccaaatgataatgaatattatgttcatagaataggacgtactggaagagctggaaaaact
ggaaaagcatacagtttcgtatctggacgtgaaatatatcaactaagagatattcaaaga
tatgctaaaactaaaatagaacaagcacctattcctgcccttagtgatgttgaagaagtt
aaaaaagataacttcattgaagaattaaaagaaaaaattaatactgaagatatttccaaa
gaaacatacataattgaaaaattagttgaagaagactataactcaatagatattgctgct
actttacttaaaggagtaattgatgataaacgttataaagaagaagaatttggagatact
gaagctcatgaaggatttgtacgtttctttatgagtgttggtagaaaacaaaacattaca
attagtgtaatattaaattccatctatgaaaaaactggacttacaggtcatcaaataggt
aacattgacatatttgataatttttcatttgtagaaattccaaaggctaatgcttcagat
ttctatagatttatgggtgatacctatatagaaaataaacgtgcacatatagaacctgca
cgacctagagataaatctaagaaaaacaatacccgaaataacaataggaattttaataaa
aaacgaggacgtaaaagtaaaaaatttaatccacatagaaatgattatcatcaaaaagat
agttatagaaaggatacttatcgaaaagaaagtaaatttagaaaagataattatggaaat
gaatcatattaa
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