Methanosphaera stadtmanae: Msp_1531
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Entry
Msp_1531 CDS
T00313
Symbol
pcn
Name
(GenBank) DNA polymerase sliding clamp (PCNA)
KO
K04802
proliferating cell nuclear antigen
Organism
mst
Methanosphaera stadtmanae
Pathway
mst03030
DNA replication
mst03410
Base excision repair
mst03420
Nucleotide excision repair
mst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Msp_1531 (pcn)
03410 Base excision repair
Msp_1531 (pcn)
03420 Nucleotide excision repair
Msp_1531 (pcn)
03430 Mismatch repair
Msp_1531 (pcn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mst03032
]
Msp_1531 (pcn)
03400 DNA repair and recombination proteins [BR:
mst03400
]
Msp_1531 (pcn)
DNA replication proteins [BR:
mst03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
Msp_1531 (pcn)
DNA repair and recombination proteins [BR:
mst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Msp_1531 (pcn)
MMR (mismatch excision repair)
Other MMR factors
Msp_1531 (pcn)
TLS (translesion DNA synthesis) factors
Other TLS factors
Msp_1531 (pcn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCNA_N
Rad9
Rad1
Hus1
PCNA_C
Ribosomal_L25p
Motif
Other DBs
NCBI-ProteinID:
ABC57898
UniProt:
Q2NE55
LinkDB
All DBs
Position
complement(1710428..1711162)
Genome browser
AA seq
244 aa
AA seq
DB search
MFKLVLSDPSIFKTSFDAISSIVDEVQIEVDSDGLRLNAIDRSHITYVHLELKESLFDIY
ECDKPIKLNLDTEELMKVLKRSKNDDVMELTVDVGNLILTFEGAVKKTFKVKLIDLEYDT
PSQPDIPYDIKIPIPVSILKEAIQDIEIVSDRVSFEVDEDKLTLEAVGDFADAKIEYLHG
EKINEKARAVYAISNIKEMLKAEKFSDNTYLSIGTDMPLTLYLELLNEEGLLSFLLAPRL
EEED
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
gtgtttaaactagtattaagtgatccaagtatttttaaaacaagttttgatgcaatttca
tcaatagttgatgaagtacaaatagaagttgattctgatggacttagattaaatgcaatt
gacagaagccatattacatatgtacacctggaattaaaggaaagtttatttgatatttat
gaatgtgataaaccaattaaattaaatttagatactgaagaattaatgaaagtacttaaa
agatcaaaaaatgatgatgtaatggaattaacagtagatgttggtaatcttattttaaca
tttgaaggagcagttaaaaagacattcaaagtaaaacttatagatttagaatatgatact
ccctcccaaccagatattccatatgacataaaaatacctattccagtttcaatacttaaa
gaagcaatacaagatattgaaatagtatctgatagagtatcatttgaagtagatgaagat
aaattaactctagaggctgttggagactttgctgatgcaaaaatagaatatcttcatggt
gaaaaaataaatgaaaaagcaagagctgtttatgctataagtaatattaaggaaatgtta
aaagcagaaaaattttcagacaacacatatctctcaataggtacagacatgcctttaaca
ttatatttagaacttctaaatgaggaaggattactttcattcctattagcacctagactt
gaagaagaagattaa
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