Methanosphaera stadtmanae: Msp_1536
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Entry
Msp_1536 CDS
T00313
Name
(GenBank) predicted RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
mst
Methanosphaera stadtmanae
Pathway
mst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msp_1536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mst03019
]
Msp_1536
Messenger RNA biogenesis [BR:
mst03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Msp_1536
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Msp_1536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
S1
RRP4_S1
Motif
Other DBs
NCBI-ProteinID:
ABC57903
UniProt:
Q2NE50
LinkDB
All DBs
Position
complement(1713648..1714229)
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AA seq
193 aa
AA seq
DB search
MNHEENEIVLPGEILCTYEEYTPFDWTYVDEGYVKSSIYGRVSVDDVEKTISVISRNAPK
QIKVGDTVIGYVTDVKAHKVLITIKKIVGSNRELVAAYKGYIHISKVSDEYNSTVYDLFK
IGDIVEAEVNSILGPEYIELSTLQDNLGVIKAMCVNCRKYMKLNKKHVLECECGTIDSRK
LSSKYGEYIDESY
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgaagaaaatgaaatagtattacctggagaaattctatgtacttatgaggaa
tatactccctttgattggacatatgttgatgagggatatgttaaatcaagtatttatggt
agagtatctgttgatgatgttgaaaaaacaatatctgtaatttctagaaatgctccaaag
cagataaaagtaggagatactgttattgggtatgtgactgatgttaaagcacataaagta
ctaattacaattaagaagattgtgggttctaatcgtgaattggttgcagcttataagggt
tatattcatatatcaaaggtatctgatgagtataattcaacagtatatgatttatttaag
ataggggatattgttgaagcagaggtaaactctattttaggtccagagtatattgaatta
tcaactttacaggataatctaggtgttataaaggcaatgtgtgttaattgccgtaaatac
atgaagttaaataaaaaacatgtgttagaatgtgaatgtggaactattgattcacgtaaa
ttatcaagtaaatatggagaatatatagatgaaagttattga
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