Methylomonas stagni: ACP4CD_16610
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Entry
ACP4CD_16610 CDS
T11652
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
msta Methylomonas stagni
Pathway
msta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACP4CD_16610 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msta03021
]
ACP4CD_16610 (rho)
03019 Messenger RNA biogenesis [BR:
msta03019
]
ACP4CD_16610 (rho)
Transcription machinery [BR:
msta03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACP4CD_16610 (rho)
Messenger RNA biogenesis [BR:
msta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACP4CD_16610 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
Mor
Spore_III_AA
AAA_22
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
XSR74874
LinkDB
All DBs
Position
complement(3623872..3625128)
Genome browser
AA seq
418 aa
AA seq
DB search
MNLTELKLKQVSEIINIAESLGLENIDRARKQELIFSILKKQAKSGEDIFGDGVLEILQD
GFGFLRTPGASYLAGPDDIYVSPSQIRRFGLRTGDTVSGKIRPPKEGERYFAMLKVESIN
FESPEQSKNKISFSNLTPLFANKRFRLEQGNGTSEDLTARIIDLVAPIGKGQRGLIVSPP
KAGKTMIMQAIAHAIAEKNPDCYLIVLLIDERPEEVTEMERCVRGEVISSTFDEPATRHV
QVAEMVIEKARRLVEHKFDVVILLDSITRLARAYNMVVPSSGKLLSGGVDANALEKPKRF
FGAARNIEEGGSLTIIATALVETGSRMDEVIFEEFKGTGNMELHLERKIAEKRVYPAINI
NRSGTRREEYLVDPDELQKTWILRKILQPMDELAASEFLLGKLKDFKTNAEFFDSMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgagttaaaacttaaacaagtcagtgaaatcatcaatatagccgagtcc
ctaggactggaaaacatagacagagcccgaaagcaggaattgatcttttcgatcttgaag
aaacaggctaaaagcggcgaggatatatttggcgatggggtattggagattttgcaggac
ggttttgggtttttacgcacccccggcgcatcctatttggccggccccgacgacatttac
gtttcgcccagccagatcagacgtttcggtttacgcaccggcgacacggtaagcggcaag
atcagaccgccaaaagaaggcgaacgctatttcgcgatgctgaaagtcgaaagcatcaac
ttcgaatctcccgaacaatccaaaaacaagatttccttttccaacctgacccctctgttc
gccaataagcgttttcgcttggagcaaggtaacggtaccagcgaagatcttaccgcccgt
atcatcgatttggtcgcgcctatcggcaagggtcagcgcggactaatcgtgtcgccgccg
aaagccggtaaaacgatgatcatgcaagcgatcgcccatgcgatagccgagaaaaacccg
gactgctacctgatcgtattgttgatcgacgaacggccggaagaggtcaccgaaatggaa
cgttgcgtacgcggcgaagtgatttccagcaccttcgacgaaccggcgacccgccacgtt
caggtggccgagatggtgatcgagaaagcccgccggttggtagagcacaaattcgatgta
gtcattctgttagactcgatcacccgtctggcgcgcgcctacaacatggtagtgccgtcg
tccggtaaattgctgtccggcggtgtcgacgcgaatgccctggaaaaacctaagcgcttt
ttcggcgcggctcgaaatatcgaggaaggcggcagcttgacgatcatcgctaccgcgttg
gtcgagaccggttcgcggatggacgaggtgattttcgaggagttcaaaggcaccggcaac
atggagttgcatctggaacgtaagatcgccgaaaaacgcgtttatccggccatcaacatc
aaccgttccggtactcgccgcgaggaatacttggtcgatcccgacgaactgcaaaaaacc
tggattctgcgcaaaatcctgcaaccgatggacgagttggcggcatccgaattcctgctg
ggcaaactcaaggatttcaaaaccaatgccgagtttttcgattcgatgaaacgctaa
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