Mycobacterium stephanolepidis: MSTE_04018
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Entry
MSTE_04018 CDS
T05257
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mste
Mycobacterium stephanolepidis
Pathway
mste03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mste00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSTE_04018 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mste03021
]
MSTE_04018 (rpoC)
03400 DNA repair and recombination proteins [BR:
mste03400
]
MSTE_04018 (rpoC)
Enzymes [BR:
mste01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSTE_04018 (rpoC)
Transcription machinery [BR:
mste03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSTE_04018 (rpoC)
DNA repair and recombination proteins [BR:
mste03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSTE_04018 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAX99316
UniProt:
A0A1Z4F283
LinkDB
All DBs
Position
complement(3974146..3978093)
Genome browser
AA seq
1315 aa
AA seq
DB search
MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD
LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL
YREIVDRYGEYFTGAMGAEAVQKLIQTFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA
AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEVPGDTGAHA
PAAKDQPETGVYSSPAEAIMALDRGALSVRAPIRVRLTQQRPPAEVEAALFENGWQPGDA
WVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNNQERRDALVKIWQEA
TDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVTI
AEKQDDGTLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAGVTTVK
VRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFHQGGVG
DDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIIPDDGGEEVVYDKLS
KRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVNEVQEV
YRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETANRRVVAEGNEPA
AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDRLNGLKENVIIGKLIPAG
TGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYSDYR
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgtatcggcctcgcgtcggcggatgacatc
cgtaactggtcctttggcgaagtcaagaagccggagaccatcaactaccgcacgctcaag
cctgagaaggacggcctgttctgcgagaagatcttcggacctactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtaactcgcgccaaggtgcgccgtgagcggatgggccacatcgaactggccgccccg
gtcacgcacatctggtacttcaagggtgttccgtcgcgtctcggatacctgctcgacctg
gcgccgaaggatctggaaaagatcatctacttcgccgcctacgtcatcaccgccgtcgac
gacgagctgcgccacaacgagctctcgacgctcgaggccgagatggaggtcgagaagaag
gctgtcgcagatcaacgcgatgccgacctggaggcccgcgcccagaagctcgaagccgac
ctggccgagctcgaggccgagggtgccaagtccgacgtgcgccgcaaggtgcgcgacggc
ggcgagcgcgagatgcgtcagcttcgcgatcggtcgcagcgtgagctggaccggctcgac
gaaatctggaccaccttcaccaagctggctcccaagcagctgatcgtcgatgaggtgctc
taccgcgagatcgtcgaccgttacggcgagtacttcaccggtgccatgggtgccgaggcc
gtgcagaagctcattcagaccttcgatctcgatgccgaggccgagaacctgcgcgagacc
atccgcagtggcaaggggcagaagaagcttcgcgccctcaagcgcctgaaggtggtggca
gcgttccagaactccaccaacagccccggtggcatggtgctcgacgcggtaccggtgatc
ccgccggagctgcgtccgatggttcagctcgacggtggccgtttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgatctg
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggatgcg
ctgttcgacaacggccgtcgtggacgtccggtcaccggaccgggtaaccgtccgctgaag
tcgctgtcggatctgctcaagggtaagcagggtcggttccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcatcag
tgtggtctgccgaagctgatggctcttgagctgttcaagcccttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcgtcagcgc
gctcaggtgtgggatgtcctcgaagaggtcatcgccgagcatccggtgctgctgaaccgt
gcaccaacgctgcaccgcctgggtatccaggccttcgagccgcagctggtggaaggcaag
gcaattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcagaggcgcaggccgaggctcgcatcctgatgctg
tcctcgaacaacatcctgtcgcccgcgtcgggccgcccgctggccatgccgcgtctggac
atggtgaccggtctgtacttcctgaccaccgaggtccccggcgataccggtgcgcatgcc
ccggccgccaaggaccagccggagaccggtgtgtacagctcgcccgccgaggccatcatg
gccctggaccgtggcgcgctgagcgtgcgtgcgccgatccgggtccggctgacgcagcag
cgtccgccggccgaggttgaggccgcgctgttcgaaaacggttggcagccaggcgatgcc
tgggtcgccgagaccacgctgggccgcgtgctgttcaacgagctgctgccccacgggtac
ccgttcgtgaacaagcagatgcacaagaaggtgcagtcggcgatcatcaacgacctcgcc
gagcggttcccgatgatcgtggttgcgcagaccgtcgacaagctcaaggacgccggtttc
cactgggccacgcgctcgggtgtcacggtctcgatggccgacgtgctggtgccgccgcag
aaggcggagattctggaccgctacgagaaggaagcggagcggatcgaaaagcagtaccag
cgtggtgctttgaacaaccaggagcgtcgcgacgcgctggtcaagatctggcaggaagcc
accgacgaggtcggtaaggcgctggaggagcactacccggccgacaacccgatcaccttg
ctgcccaagtccggcgcgaccggaaacatgactcaggtgcgcaacctggcgggcatgaag
ggtctggtgaccaacccgaagggtgagtacatcccgcggccgatcaagtcctcgttccgt
gagggcctgaccgttctggagtacttcatcaacacgcacggcgcccgtaagggtctggcg
gacaccgcgcttcgtaccgctgactcgggttacctgacccgtcgtctggtggacgtctcg
caggacgtcatcgtccgcgagcacgactgcggtaccgagcgtggcatcaacgtgaccatc
gccgagaagcaggacgacggcacgctgatccgcgacgcgcacatcgaaacctctgcgtac
gcacggactctcgccgctgacgcggtagatgccgatggcaacgtgctggtggagcgtgga
cacgacctgggtgacccggcgatcgagaagcttctcgccgcgggtgttaccacggtcaag
gtgcggtcggtgctcacctgcaccaccggcaccggggtctgcgcgatgtgctacggccgc
tcgatggcgaccggcaagctcgtcgacatcggtgaggcggcgggcatcgtggccgcacag
tccatcggtgagcccggtacgcagctgaccatgcgtaccttccaccagggtggcgtcggt
gacgacatcaccggtggtttgccgcgtgtcaccgagctgttcgaggcgcgagttcctaag
ggcaaggcgccgattgccgatgtcaccggacgggttcgcctggaagagggcgagcgcttc
tacaagatcaccatcatcccggatgacggtggcgaggaagttgtctacgacaagctctcc
aagcgtcagcgcctgcgcgtcttcaagcacgaggacggttcggagcgtccactggccgac
ggcgaccacgtcgaggtcggccagcagctcatggagggtgcggccgatccgcacgaggtg
ctccgtgtcatgggtccgcgtcaggtgcaggtgcacctggtcaacgaggtccaggaggtg
taccgcagccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgccagatg
ctgcgccgcgtgacgatcatcgactcgggcgcaacggaattcctgcccggctcgctgacc
gagcgtggcgagttcgagaccgcgaaccgtcgcgtggtggccgagggcaacgagcccgcg
gccggccgtccggtgctgatgggtatcaccaaggcatcgctggccaccgactcgtggctg
tcggctgcgtccttccaggagaccactcgcgtgctgaccgatgcggctatcaactgccgc
agcgacagactgaatggtctgaaggagaacgtcatcatcggtaagttgatcccggctggt
accggtatcaaccgctaccgcaacatttcggtgcaaccgaccgaagaggcgcgggccgcc
gcgtacacgatcccgtcgtacgaggatcagtactacagccccgacttcggttccaacacc
ggtgctgcggtgccgctggacgactacggatacagcgactaccgctag
DBGET
integrated database retrieval system
