Mannheimia succiniciproducens: MS0212
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Entry
MS0212 CDS
T00201
Symbol
rpoB
Name
(GenBank) RpoB protein
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
msu
Mannheimia succiniciproducens
Pathway
msu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MS0212 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msu03021
]
MS0212 (rpoB)
03400 DNA repair and recombination proteins [BR:
msu03400
]
MS0212 (rpoB)
Enzymes [BR:
msu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MS0212 (rpoB)
Transcription machinery [BR:
msu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MS0212 (rpoB)
DNA repair and recombination proteins [BR:
msu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MS0212 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-ProteinID:
AAU36819
UniProt:
Q65W41
LinkDB
All DBs
Position
182813..186841
Genome browser
AA seq
1342 aa
AA seq
DB search
MGYSYTEKKRIRKDFGKRPQVLNVPYLLTIQLDSFEKFIQRDPEGQQGLEAAFRSVFPIV
SNNGSTELQYVSYKLGEPVFDVRECQIRGTTFAAPLRVNLRLVSYDRDAAPGTIKDIKEQ
DVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYSTEEILDLFFEKIQFEIQDNKLLMA
LVPERLRGETASFDIEANGKVYVERGRRITARHIRTLEKDNVTKIDVPTEYIVGKVSAKD
YIDLESGELVCPANMEISLDILAKLAQAGYKSIETLFTNDLDFGPYISETLRVDPSSDRL
SALVEIYRMMRPGEPPTKEAAEALFDNLFFSAERYDLSAVGRMKFNRSLGLAEGVGNGVL
SKEDIVGVMKKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLDAVTPQDLINAKPVSAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNNYGFLETPYRKVVDGQVT
EEIEYLSAIEEGNYVIAQANASLDEDFRFTDAFVTCRGEHGESGLYRPEEIQYMDVSPQQ
VVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAVVAK
RGGIIQYVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGEPIGR
GEVLADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQQDRFTTIHIQELSCV
ARDTKLGAEEITADIPNVGETALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKEAKKD
IAEELEILEAGLFSRVRNLLIDGGVDAKELDRLDRTKWLEQTLNDEAKQNQLEQLAEQYE
ELRKDFEHKLEVKRGKIIQGDDLAPGVLKVVKVYLAVKRRIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAKGIGEQINRMLKEKQEIE
KLRGYIQKAYDLGGGSQKVDLNTFTDEEVMRLAQNLRKGMPLATPVFDGAEEKEIKDLLE
LGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGTHQMDPGTP
ESFNVIMKEIRSLGINIDLDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgggttactcctatactgagaaaaaacgtatccgtaaagactttggtaaacgtccacaa
gttttaaacgtaccttatttattaacaatccaactcgattcttttgaaaaatttattcaa
agagatcctgaaggtcagcagggtttagaagccgcattccgttcagtttttcctatcgta
agtaataacggtagcacggaattgcaatatgtaagctataaacttggcgaacctgtattt
gacgtacgcgaatgtcagattcgcggcacgacctttgccgcgccgttacgcgttaacttg
cgtttggtaagttacgatcgtgatgcggctccgggcacaattaaagatattaaagaacaa
gacgtttatatgggtgaaatcccattgatgacggataacggtactttcgtaattaacggt
accgaacgcgttatcgtctctcaattgcaccgtagcccgggtgtgttctttgattcggat
aaaggtaaaacccattcttcgggtaaagtgctttataacgcacgtattattccttaccgc
ggctcttggctggattttgaattcgacccgaaagataatttattcgcccgtatcgaccgt
cgtcgtaaattgccggcaacaattattctgcgcgcgttaggttatagtaccgaagaaatt
ttggatttattctttgaaaaaatccaatttgaaattcaagataacaaattattaatggcg
ctagtgccggaacgtttacgcggcgaaaccgcctcattcgatattgaagcgaacggtaaa
gtttacgttgaacgtggccgtcgtatcactgcgcgtcatatccgcacattagaaaaagat
aatgtaaccaaaattgatgtgcctacagaatatatcgtaggtaaagtttccgctaaagat
tatattgatttagagtcgggcgaattggtttgccctgcgaatatggaaatctcgcttgat
atcttagctaaattagctcaggcgggttacaaatcaattgaaactttatttactaacgat
ttagatttcggcccttatatttccgaaactttacgtgttgatccttcatcggatcgttta
agtgcgttagttgaaatctaccgtatgatgcgtccgggcgaaccgccgacaaaagaagcg
gcggaagcgctattcgataacctgttcttctcagcggagcgttatgatttatctgcggta
ggccgtatgaaattcaaccgttctttaggcttggcggagggcgttggtaacggcgtgcta
agcaaagaagatatcgtcggcgtgatgaaaaaactgattgatatccgtaacggtcgaggc
gaagtggacgatatcgaccacttaggcaatcgtcgtatccgttctgtcggcgaaatggcg
gaaaaccaattccgtatcggtttggtacgtgttgaacgtgcggtaaaagagcgcttatct
ttaggtgatcttgatgcggtaacgccacaggatttaatcaatgccaaaccggtttctgcg
gcagtaaaagaattcttcggttcttcacagctttcgcaatttatggaccaaaacaacccg
ttatcggaagtaacgcataaacgtcgtatttccgcattaggtccgggcggtttaacccgt
gaacgtgcaggctttgaagtacgagacgtacacccgactcactatggtcgcgtatgtccg
atcgaaactcctgaaggtccgaatatcggtttgattaactctttatccgtgtatgcccga
actaataattacggtttcttggaaacgccttatcgtaaagttgttgacggtcaggtaacg
gaagaaatcgaatatttatcggctattgaagaaggtaattacgttattgcacaggcgaat
gcaagtctggatgaagatttccgctttaccgatgcgttcgtaacctgtcgcggcgaacac
ggcgaatcgggtttatatcgtcctgaagaaatccaatatatggacgtttcgcctcaacag
gttgtttccgtggctgcggcattaatcccgttcttggagcacgacgatgcgaaccgtgcg
ttgatgggtgccaacatgcaacgccaagcagtaccgacattacgtgcggataaaccgtta
gtaggtaccggtatggaaaaaccgatcgcccttgactccggtgttgcggtagtggctaaa
cgcggcggtattatccaatacgttgacgcttcccgtatcgtggttaaagtcaatgaagac
gaaactattccgggcgaagcgggtatcgatatttataacttaattaaatatacccgttca
aaccaaaatacttgtatcaaccagattccttgtgtgaatttaggtgagcctattggtcgc
ggcgaagtgttagccgatggtccgtcaacggatttaggcgaactggcgttaggtcaaaat
atccgtgtggcgttcatgccttggaacggttataactttgaagactcaatgttagtatcc
gaacgcgtcgttcaacaagaccgttttacgactatccatattcaggaattatcctgtgtg
gctcgtgataccaaacttggcgccgaagaaattacagctgatattccgaacgtaggtgag
accgcgttaagcaaacttgacgaatcgggtatcgtttacgttggtgcggaagtgaaaggc
ggcgatatcttagtaggtaaagtaacgcctaaaggcgaaacccaattaacgccggaagaa
aaacttttacgcgcaatcttcggtgaaaaagcctctgacgttaaggattcttcattacgc
gtaccaaacagcgtttccggtacggttatcgacgttcaggtatttactcgtgacggcgtg
gaaaaagataaacgcgcgctggaaatcgaagaaatgcagttaaaagaagcgaagaaagat
attgccgaagagttagaaattctggaagcaggtttattctcccgcgttcgtaatctgtta
attgacggcggcgttgatgcgaaagaattggatcgtttagatcgtactaaatggttggaa
caaactttaaatgatgaagcgaaacaaaaccaattagaacaactggcggaacaatacgaa
gaattacgcaaagacttcgaacataaattagaagtgaaacgcggcaaaattattcaaggt
gatgatttagcgccgggcgtattgaaagtggttaaagtttatcttgcggtgaaacgtcgt
attcaacccggggataaaatggcgggtcgtcacggtaacaaaggtgttatttcaaaaatt
aaccctgttgaagacatgccgtacgatgaaaacggtcaacctgttgaaatcgtattgaat
ccgttgggcgtaccgtctcgtatgaatatcggtcagattcttgaaacccacttaggctta
gcggctaaaggtatcggtgagcaaatcaaccgtatgttgaaagaaaaacaagagattgag
aaactacgcggatacattcaaaaagcctatgatttaggcggtggctcacaaaaagtggat
ttaaatacctttactgatgaagaagttatgcgtttagcgcaaaacttacgtaaaggtatg
ccgcttgcgacacctgtatttgacggtgcggaagaaaaagaaatcaaagatctcttggaa
ttaggcggtttaccgacttccggtcagattacgctatacgacggccgcacaggtgaaaaa
tttgaacgtccggtaaccgtgggttacatgtatatgctcaaattgaaccacttagttgat
gataaaatgcacgctcgttcaaccggttcttatagtcttgttacacaacaaccgttgggt
ggtaaagcacaattcggtggtcagcgtttcggtgaaatggaagtatgggcattagaagca
tacggtgcggcatacacgttacaagaaatgttaaccgtgaaatccgatgacgtgaacggc
cgtacgaagatgtataaaaacatcgtgagcggcactcatcaaatggatccgggtacccct
gaatctttcaatgtaatcatgaaagagattcgttcgttgggtatcaacattgacttagac
gaagagtaa
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