Mannheimia succiniciproducens: MS0216
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Entry
MS0216 CDS
T00201
Symbol
mfd
Name
(GenBank) Mfd protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msu
Mannheimia succiniciproducens
Pathway
msu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MS0216 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msu03400
]
MS0216 (mfd)
Enzymes [BR:
msu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MS0216 (mfd)
DNA repair and recombination proteins [BR:
msu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MS0216 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
UB2H
SecA_DEAD
DUF6007
RecG_dom3_C
Glyco_hydro_56
Motif
Other DBs
NCBI-ProteinID:
AAU36823
UniProt:
Q65W37
LinkDB
All DBs
Position
192190..195636
Genome browser
AA seq
1148 aa
AA seq
DB search
MTTHYFNLDIPTQAGDHKIVANVLTGSDGLAICEMAEQFQGLTVVVANDTKSAVRLEKIL
QESGKLEVRYFPDWETLPYDSFSPHQDIISSRLSALFYLQNTRKGILILSVSTLMQRICP
PQYLQHNVLLIKKGDRLVIEKLRLQLENAGYRAVEQVMEHGEFAVRGALLDLFPMGSPLP
FRLDFFDDEIDSIRTFDADTQRTLEEIRQINLLPAHEFPTDDKSIEFFRAQFRETFGEIR
RDPEHIYQQVSKGTLVSGIEYWQPLFFENMATLFDYLPANTLFVDMEQYQIQAERFYQDA
VQRFESRKIDPMRPLLAPERLWLRIDEVNRALRNYPRISLKAEKVRTSVRQKNLPLKALP
ELQIQPQQKEPLQNLRHFIEKFKGHIVFSVETEGRRETLLDLLSPIKLRPKQVNSLFEAQ
SQTYSLQISSLDNGFIIEQENGEPIAIICETELLGERVQQRGRDKRKSVNPDTLIRNLAE
LKIGQPVVHLDHGVGRYGGLVTLENAGIKAEYLLLTYANDAKLYVPVANLHLISRYVGGS
EETAPLHKLGSDSWAKARRKAAEKIRDVAAELLDVYAQREAQKGFAFHYNREEFMQFSAT
FPFEETHDQEAAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLV
PTTLLAQQHYENFRDRFANLPVNVEMVSRFRTAKEQKKILEDLSAGKVDILIGTHKLIQS
DVKFNDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMAMNGIRDLSII
STPPARRLTIKTFVRQADDLLIREAILREILRGGQVYYLHNDVASIENCAEKLTALVPEA
RIIIGHGQMHERELERVMTDFYHQRFNVLVCSTIIETGIDIPTANTIIIERADHFGLAQL
HQLRGRVGRSHHQAYAYLLTPPPKLMTKDAVKRLEALESLDNLGAGFILATHDLEIRGAG
ELLGSEQSGQIESIGFSLYMELLEAAVQAMKQGREPSLDELTQQQVEIDLRIPALLPEDY
LGDVNMRLSFYKRIAGAENKPALDELKVELIDRFGLLPEATKNLMQITELRLMAKQLDII
RIDGSQNGGFIEFSPTADIDPMKFINLIKQQPAVFKFDGPTKFRFSCALEQAQKRLDFIF
NLLQSLMD
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgacaacacattattttaatttggatattcccactcaagcgggagatcacaaaattgta
gccaacgtattaacgggttcggacggattggcgatttgtgaaatggcggaacagtttcag
gggctcaccgttgtggtggctaacgataccaaaagtgcggtgcgtttagagaaaattttg
caggaatccggtaagcttgaagtccgttatttccccgattgggaaaccttgccttacgat
agtttttctcctcatcaggatattatttcctctcgtctcagtgcgcttttctatttgcaa
aatacccgaaaaggtattctgattttatcggtgagtaccttaatgcaacggatttgcccg
ccgcaatatctgcaacataatgtgttgctgattaaaaaaggcgatcgtctggttattgaa
aaattacgcctgcaattggaaaatgcgggctatcgcgcggtagaacaggttatggaacat
ggcgaatttgccgtgcgcggcgctttgttggatctttttcctatgggcagcccgcttccg
ttccggttggatttttttgatgatgaaatagacagcatccgcacttttgatgcggatact
cagcggacgttggaagaaatcagacagattaatttattgccggcgcatgaattccctacg
gatgacaaaagtattgaatttttccgtgcgcaatttcgcgaaactttcggcgaaatccgc
cgtgatccggagcatatttatcaacaggtcagcaaaggcacgttagtttccggtattgaa
tattggcagccgttgttttttgagaatatggcgactttatttgattatttaccggcaaat
acgttgttcgtggatatggaacaatatcaaattcaggcggaacgcttttatcaggatgcg
gtacaacgttttgaaagccgtaagattgaccctatgcgcccgttgctagcgccggaacgt
ttgtggttgcgcattgacgaagtcaatcgggcgttaagaaattatcctcggattagcctg
aaagcggaaaaagtgcggacttcggtacggcaaaaaaatctgccgctgaaagccttgccg
gaattgcaaattcagccgcaacaaaaagaacccttacaaaatcttcgtcactttattgaa
aaattcaaaggacatattgttttttccgtagaaacggaagggcgacgcgaaaccttactg
gatttgctttcacctattaaattacgcccaaaacaagtgaactcgctatttgaggcgcag
tcacaaacttacagcctgcaaatcagcagcctggataacggttttattatcgagcaagaa
aatggcgaacctattgccattatttgcgaaacggaattgttaggcgaacgggttcagcaa
cgcgggcgggacaaacgtaagtcagtcaatcccgatactttaatccgtaatcttgcggaa
ttaaaaatcggtcagccggtggttcatttggatcacggcgtcgggcgttacggcggattg
gttacgctggaaaacgccggtatcaaggcggaatatttactgctcacttatgcaaacgat
gccaagctttatgtaccggtcgccaatttacatttgatcagccgctatgtgggcggttcc
gaagaaacggcgccattgcataaattaggtagtgatagctgggcgaaagcaagacggaaa
gcggcggaaaaaatccgcgatgtggcggcggaattgcttgatgtgtatgcgcagcgcgaa
gcgcaaaagggctttgcttttcattataatcgtgaagaatttatgcagttttcggcgact
ttcccttttgaggaaactcatgatcaggaagcggcgatcaatgcggttatttccgatatg
tgtcagccgaaagcaatggaccgtttagtttgcggcgatgtggggtttggtaaaaccgaa
gtggcgatgcgggcggcatttcttgcggtgatgaatcataaacaggtggccgtattagta
ccgaccaccttattggcgcaacaacattatgaaaacttccgcgatcggtttgcgaatttg
ccggtgaatgtggaaatggtttcacgtttcagaacggcgaaggaacagaaaaaaattctc
gaagatttatccgccggcaaagtggatattcttatcggcacgcacaaattgattcaatcc
gatgtgaaatttaacgatttaggcttactgattattgatgaagaacaccggttcggtgtg
cgtcaaaaagaaaaaattaaacagctgcgcgccaatgtggatattttaacgctcaccgct
acaccgattccgcgtacccttaatatggcgatgaacggtattcgtgatttatccattatt
tctacgccgccggcacgtcgtttgactatcaaaacctttgtgcgacaggcggacgatttg
cttattcgcgaagctattttacgtgaaattttgcgcggcgggcaggtttattatttgcat
aatgatgtggcaagtattgaaaattgtgcggaaaaattgaccgcacttgtgccggaagcc
agaattattatcggtcacgggcaaatgcacgaacgggaattggaacgggtgatgacggat
ttttatcatcagcgttttaatgtgctggtttgttccaccattatcgaaacgggaatcgat
atccctacggcaaataccattattattgagcgcgcggatcattttggtttggctcagctt
catcagttacgcgggcgagtcgggcgttcccatcatcaggcctatgcttatttgctcaca
ccgccgccgaaattaatgaccaaagatgcggtgaaacgtttagaagctttagaaagtctg
gataatttaggggcgggctttattcttgccactcatgacctggaaatccgcggtgccggg
gaattgctgggcagcgaacaaagcggacaaattgaaagtatcggttttagtttgtatatg
gaattgcttgaagctgcagtgcaagcgatgaaacaagggcgcgaaccttcgcttgacgag
cttactcagcagcaggtggaaattgatttgcgcattcccgctttattaccggaagattat
cttggtgatgtgaatatgcgcctttctttctataaacgtattgcgggggcggagaataag
cccgctctcgacgagttgaaagtagaattaatcgatcgttttggtctactgccggaagcg
acaaaaaatctgatgcagattacggaactgcgtttaatggcaaaacagttggatattatc
cgcatagacggttcgcaaaacggcggttttattgaattttcaccgactgccgatatagat
ccgatgaagtttattaatctcattaaacagcagcccgcggtgttcaaatttgacgggccg
actaaattcagattcagctgtgccttagaacaggcgcaaaaacgattggatttcattttt
aatttgcttcagagtttaatggattaa
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