Mannheimia succiniciproducens: MS0495
Help
Entry
MS0495 CDS
T00201
Symbol
srmB
Name
(GenBank) SrmB protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msu
Mannheimia succiniciproducens
Pathway
msu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MS0495 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msu03019
]
MS0495 (srmB)
03009 Ribosome biogenesis [BR:
msu03009
]
MS0495 (srmB)
Enzymes [BR:
msu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MS0495 (srmB)
Messenger RNA biogenesis [BR:
msu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MS0495 (srmB)
Ribosome biogenesis [BR:
msu03009
]
Prokaryotic type
rRNA helicases
MS0495 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAU37102
UniProt:
Q65VA8
LinkDB
All DBs
Position
459877..461718
Genome browser
AA seq
613 aa
AA seq
DB search
MTETKITFGDLGLPEFILSAVSDMGFETPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLAQIDIEEKHPQMLVMAPTRELAIQVAEACELFTKNAKGVHIATLYGGQRYDIQLR
ALRQGAQVVVGTPGRILDHIRRGTLNLSELKFIVLDEADEMLRMGFIDDVETVMAELPAQ
HQTALFSATMPEPIRRITKRFMTDPQEVKIQSTQRTNPDIAQSCWYVRGYRKNEALLRFL
EVEDFDGAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV
ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLSNI
ERLMKKPIEEVDVPNHEALQARRREKFKAKITKQLEHHDLEQYRLLLEGLFTPDQDQEDI
AAAMLMLLQGKQKLILPPEPPMEKRGRRERDDRRGERGDRRERRPEERRGYGNPQPMDLY
RIEVGRADGVDVRHIVGAIANEGDINSRNIGHIKLYDEYSTVELPQGMPKELLQVFGKAR
VLNKQMRMTFVSEAGETVGRERHEGRRNDRRDNGFRREERRFNDRGNRSFNERAPRREFR
ERNDRRDRRDRRS
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaactaaaatcacttttggggatttaggcctgcctgaattcattctttctgct
gtttccgacatggggtttgaaacgccttcaccaattcaacaagcatgtattccgcattta
ttaaacggtcgtgacgtgttaggtatggcgcaaaccggtagcggtaaaacggcggcattc
tcacttccattgttagcgcaaattgatatagaagaaaaacatccgcaaatgctggtgatg
gcgccaacccgtgagcttgcaattcaggtagcggaagcttgtgaactatttactaaaaat
gcaaaaggcgttcacattgcgacactttatggcggtcaacgctatgacatccaattacgc
gcattacgccagggcgcacaggttgtagtcggaacaccgggccgtattttagatcatatc
cgccgcggcaccttaaatctttccgagttaaagttcatcgtattggatgaagcggacgaa
atgctgcgtatgggctttattgatgatgtggaaaccgtgatggcggaattgccggcacaa
catcaaaccgcgcttttctcggcaaccatgccggaaccgattcgccgtataaccaaacgt
tttatgacggatccgcaagaggtaaaaattcaatctactcaacgcactaatccggatatt
gcgcaaagttgttggtatgtgcgcggttatcgtaaaaatgaagccttgttgcgttttctt
gaggtggaagattttgatggagccattatctttacccgcactaagaccggtactttagac
gttaccgaactattggaaaaacacggtttccgtgccgccgcattaaacggcgatatgact
cagcaactgcgcgaacagactttagatcgcttacgtaacggtagcctggatattttagtg
gcaacagatgttgcagctcgcggtttggacgttgaacgtattagtttggtggttaattat
gatattccgttagatgcggaatcttacgttcaccgcatcggtcgtaccggtcgcgcgggt
cgttccggtagcgcaattttgtttgtagagccgcgcgaacgccgtttgttaagtaatatc
gagcgtttaatgaaaaaaccgattgaagaagtggacgtaccgaatcacgaagcgttacag
gctcgccgtcgtgaaaaattcaaagcgaaaattaccaaacaattggaacatcatgattta
gaacaatatcgtttattattagaaggtctgtttactccggatcaggatcaggaagacatt
gcggccgcaatgttgatgttattacaaggcaaacagaaattaattcttccgcctgagccg
ccgatggaaaaacgcggtcgtcgcgaacgtgatgatcgtcgcggagagcgaggtgatcgt
cgtgaacgtcgtccggaagagcgccgcggttacggcaatcctcaaccgatggatttatac
cgtattgaagtcggtcgtgcggacggtgttgatgttcgtcatattgtcggtgcgattgcc
aatgaaggcgatattaacagccgtaatatcggtcatattaaactttatgatgaatattca
acggtagaattaccacaaggtatgccgaaagaattattacaggttttcggtaaggctcgt
gtgttaaacaaacaaatgcgtatgacatttgtaagtgaagccggtgaaaccgtaggtcgt
gaacgtcatgaaggtcgccgtaatgatcgtcgtgataacggttttagacgtgaagaacgt
cgctttaatgacagaggaaaccgctcttttaatgagcgggcgcctcgcagagagttcaga
gaacgtaatgatcgcagagaccgtagggatcgtcgcagttaa
DBGET
integrated database retrieval system
