Mannheimia succiniciproducens: MS1468
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Entry
MS1468 CDS
T00201
Symbol
vacB
Name
(GenBank) VacB protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
msu
Mannheimia succiniciproducens
Brite
KEGG Orthology (KO) [BR:
msu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msu03016
]
MS1468 (vacB)
Enzymes [BR:
msu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MS1468 (vacB)
Transfer RNA biogenesis [BR:
msu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MS1468 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
DUF2274
DUF3859
TRAM
HTH_66
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AAU38075
UniProt:
Q65SI5
LinkDB
All DBs
Position
1460226..1462205
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AA seq
659 aa
AA seq
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MFQNNPLLSQLKQQLHDSKPHVEGVVKGTDKAYGFLETEKETFFIAPPAMKKVMHGDKIK
AAIETIGDKKQAEPEELIEPMLTRFIAKVRFNKDKKLQVLVDHPNINQPIGAAQAKTVKQ
ELKEGDWVVATLKTHPLRDDRFFYAQIAEFICSAEDEFAPWWVTLARHEQSRYPVQGQEV
YSMLDTETRRDLTALHFVTIDSENTQDMDDALYIEPVTAPNDEQTGWKLAVAIADPTAYI
ALDSQIEKDARKRCFTNYLPGFNIPMLPRELSDELCSLMENETRAALVCRLETDMQGEIV
GEPEFILAQVQSKAKLAYNNVSDYLEQVENAWQPENESTQQQINWLHQFALVRINWRKKH
GLLFKEKPDYSFVLADNGHVREIKAEYRRIANQIVEESMIIANICCAHYLAKNAQTGIFN
THVGFDKKFLPNAHNFLMANLSNEENQQELAERYSVENLATLAGYCRMRHDIEPIEGDYL
EFRLRRFLTFAEFKSELAPHFGLGLTGYATWTSPIRKYSDMVNHRLIKACLANRECVKPS
DETLARLQEARKQNRMVERDIADWLYCRYLADKVESNPEFRAEVQDCMRGGLRVQLLENG
ASVFVPASSIHPNKDEIQVNTDELALYINGERRYKIGDIVNIRLTEVKEETRSLIGNLV
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagaacaatcctttattatctcaattaaaacaacaattacacgacagtaagccg
cacgttgaaggcgtggtgaaaggcacggataaagcctacggtttcttagaaacggaaaaa
gaaactttcttcattgcgccgccagccatgaaaaaagtgatgcacggcgataaaataaaa
gcggcaatcgaaactatcggcgataaaaaacaggcggagcctgaagaattaattgaaccg
atgctgacccgttttatcgcaaaagtgcggttcaataaagataaaaaattacaagtcctg
gttgatcaccccaatattaatcagcctatcggcgccgcccaagccaaaaccgtcaaacag
gaactcaaagagggcgattgggtggtggcgacgttaaaaacccatccgctacgcgatgat
cgtttcttttatgcgcaaattgccgaatttatttgttcggcagaggacgaattcgcccct
tggtgggtaaccctcgcgcgtcacgaacagtcccgttatccggttcaaggtcaagaagtt
tattccatgttagatacggaaacccgccgggatttaaccgcacttcatttcgtcaccatc
gacagtgaaaatacgcaggatatggacgatgccctttatatcgagcctgttaccgcccca
aacgacgaacagacgggctggaagcttgcggtggcgattgctgatcctaccgcttatatc
gcccttgactcacaaattgaaaaagatgcccgcaagcgctgtttcactaattatttgccg
ggatttaacattccgatgctgcctcgggaactatccgacgaactttgttcattaatggaa
aatgaaacccgcgcggcgcttgtttgccgactcgaaaccgatatgcaaggcgaaatcgtc
ggcgaacccgaatttatattagctcaggtacaatcgaaagctaaactggcttataacaac
gtatccgactatttagaacaagtcgagaacgcctggcaacctgaaaacgaaagtactcaa
caacaaattaattggctgcaccagtttgccttggttcgcattaactggcgaaaaaaacac
gggttattattcaaagaaaaaccggattacagtttcgtactggcggataacggtcatgtg
cgtgaaattaaggcggaatatcgtcgcattgccaaccaaatcgtggaagaatccatgatt
atcgccaatatttgttgcgcgcattatttggcgaaaaatgcgcaaaccgggattttcaat
actcatgtaggattcgataaaaaattcctgccgaacgcccataatttcttaatggcaaat
ctgagtaacgaagaaaaccaacaggaattagccgagcgttattccgtggaaaatttagct
accttagcgggctattgccgtatgcgacatgatattgaaccaattgaaggcgattatctg
gaattccgtttacgtcgtttcctgacctttgcggaatttaagtcggaactcgcaccgcat
ttcggtttaggtttaacgggttacgccacctggacctcaccaatccgtaaatattccgat
atggtgaatcaccgcttaattaaagcctgtctagctaaccgggaatgtgtaaaaccgagc
gatgaaactcttgcccgcttgcaggaagcccgtaaacaaaaccgtatggtggaacgtgat
attgccgattggctatactgccgttatctggcggataaagtggaaagcaacccggaattc
cgggcggaagtacaggattgcatgcgcggcggtttacgggtgcaattattggaaaacggt
gcaagcgtattcgtgccggcctcaagtattcatccgaacaaagacgaaattcaagtcaat
accgatgaactggccctttatatcaatggcgaacgccgttataaaatcggcgacatcgtt
aacattcggttgacggaagtaaaagaagaaacccgtagcctgatcggcaacctggtttaa
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