Mannheimia succiniciproducens: MS1622
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Entry
MS1622 CDS
T00201
Symbol
cafA
Name
(GenBank) CafA protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msu
Mannheimia succiniciproducens
Pathway
msu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MS1622 (cafA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msu03019
]
MS1622 (cafA)
03009 Ribosome biogenesis [BR:
msu03009
]
MS1622 (cafA)
Enzymes [BR:
msu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MS1622 (cafA)
Messenger RNA biogenesis [BR:
msu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MS1622 (cafA)
Ribosome biogenesis [BR:
msu03009
]
Prokaryotic type
rRNA processing factors
MS1622 (cafA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
KH_11
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AAU38229
UniProt:
Q65S31
LinkDB
All DBs
Position
complement(1616619..1619501)
Genome browser
AA seq
960 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPDDYVYQGRPNIKDIIKEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERLELKDALSSLDVPEGVGLIVRTAGVGKSSEEL
QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKA
KAHIKLVRPDFISRIKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RMREAVRQDRARIQISRISRFGLLEMSRQRISPSLGESSHHICPRCQGTGKVRDNESLSL
SILRLLEEEALKENTKQVHTVVPVNIASYLLNEKRKAIHDIEKRHNVEILVVPNKEMETP
HFSVFRVRDGEEINTLSYNLVKVYEEQETTFIADEPFTTRVTETAAVTTENVLESAALSM
TISEPAPTIEVKKEEQPSLFVRIVAAIKGLFASEPKVEEKVEEAPQPNTRNRRNNQEHRN
SRRNRNERNNRGNNEEPADKVQSEKSAEKAERPARSERTRRNNRNRNAAADDSLNNESVI
EAVTNETTDDEAKAPQQRRQRRDLRKRVRVTEEQVTVAAEPVDKPSLAESVPVEPVVEEN
VYQERDRQDNRRRLPRHLRVNNQRRRRNAEQVSAMPLFAAVASPELASGKVWIESPTAPA
KPKESAFLSVDELLEQQSEVKQPGVTTPAPATQVIFDKADNDIAPLASFVTQPANESVQK
KVQESLDRLEQTNGQQTEVKEDDNASNMTLSDVTATESAVEKTEVLNLSNYRFSGRLGTI
SAVKHTKAEMTLAKAADEVLPPFEIVQWQDSRYYFHGKGSAGHNSAVSHVFTAATQAKAE
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaatcaatgcgactcaacaagaagagttgcgtgttgcgttggtcgat
ggccagcgcctgtttgatctggatatcgaaagccccggtcacgaacaaaaaaaagccaat
atctacaaaggaaaaatcacccgcgtagaaccaagtcttgaagcggcatttgttgattat
ggtgccgaacgtcacggtttcctgccgttaaaagaaattgcccgcgaatatttccccgat
gattacgtttatcaaggtcgtccgaatattaaagacataatcaaagaagggcaggaagtt
attgttcaggtgaataaagaggaacgtggcaacaaaggtgccgcgttaaccacttttgtt
tctttagccggtagttacttggttattatgccgaataatcctcgtgcgggcggtatttcg
cgccgtatcgaaggggatgaacggcttgaattaaaagatgcgttaagttctttagatgtg
cctgaaggtgtgggcttaatcgttcgtaccgccggtgtgggcaaatcttcggaagaattg
caatgggacttaaaagttttattacatcattgggaagcaatcaaacaggcttcgcaaagc
cgtcctgcaccgtttttgattcatcaggaaagtgacgttatagttcgtgctatccgcgat
tatctgcgtcgtgacatcggtgagattttaatcgatagcccgaaagtttacgaaaaagcc
aaagcccatattaaattagtacgccccgattttattagccgtattaaattataccaaggc
gaagtgccgctattcagccattatcaaattgaatcgcaaattgaatcggcgtttcaacgg
gaagtacgtttgccgtccggcggttcgatcgttatcgacgtaacggaagccttaaccgca
attgacattaactcggcacgctcaacccgtggcggcgatattgaagaaacggcgttaaat
accaacttagaagccgccgatgaaatcgcccgccagttacgtttacgtgacttaggcggt
ttgattgttatcgactttattgatatgaccccggttcgccaccagcgcgaagtggaaaac
cgtatgcgtgaagcggtacgtcaggatcgtgcgcgtatccaaatcagccgtatttcccgt
ttcggtttattggaaatgtcccgtcagcgtatcagcccgtctttaggtgagtcttcgcat
catatttgtcctcgttgtcagggaaccggtaaggtgcgtgataacgaatcgctttcatta
tctattttacgtttgcttgaagaagaggcactgaaagaaaatactaaacaggttcatacg
gtggtgccggtgaatattgcttcgtatttactgaatgaaaaacgtaaagcgattcatgac
attgaaaaacgtcacaacgttgaaattctggttgtgccgaataaagaaatggaaactccg
cattttagcgtgttccgtgtacgtgacggtgaagaaatcaataccttaagttataactta
gtcaaagtatatgaagagcaggaaacgacctttattgccgatgaacccttcaccactcgt
gtgacggaaacagcggctgtaaccactgaaaacgtgttagaaagcgcagcgttatccatg
acgatttccgaacctgcaccgacaattgaggtaaaaaaagaagaacagccttcgttattt
gttcgtattgtggcggcgattaaaggattatttgcttccgaacctaaggttgaagaaaaa
gtcgaggaagcgccacagccgaatacccgtaaccgtcgtaacaatcaggaacatcgtaat
tcccgtcgtaatcgtaatgaacgaaataatagaggaaataacgaagagccggcagataaa
gtccagtctgaaaaaagtgctgaaaaagccgaacgtccggcacgttccgaacgtacccgt
cgtaataaccgcaatcgtaacgcggcggctgatgacagcttaaataatgaatcggtgatc
gaagcggtaaccaatgaaacgaccgatgatgaagctaaagcgccgcaacaacgtcgtcaa
cgtcgtgatttgcgtaaacgtgtgcgcgtaacggaagagcaggtaactgtcgcagcagaa
cctgttgataaaccgtctttagcggaaagcgtgccggttgaacctgttgttgaggaaaat
gtttaccaagaacgtgatcgccaagacaaccgtcgccgtttgcctcgtcatttgagagtt
aataaccaacgtcgccgccgtaatgcggaacaggtttcggctatgccgttgtttgcggca
gtcgcatcacctgaattagcaagcggtaaagtttggattgagtcaccgactgcacctgcg
aaaccgaaagaaagcgcgttcctatctgtagatgagttattagagcagcaaagcgaagta
aaacagcctggtgttacaacaccggcacctgctacccaggttatttttgataaagcagat
aatgatattgccccgttggcaagttttgtgactcagcccgctaatgaatcggtacagaaa
aaagtgcaagagtctttagaccgtttagaacaaacaaacgggcaacaaactgaagttaaa
gaggatgataatgcttcgaatatgacgctttctgacgttactgcgacagaaagtgcggtc
gaaaaaacggaagttttaaatttgtcgaattatcggtttagcggacgtttaggtacaatt
tctgcagttaaacataccaaagcggaaatgacccttgctaaagctgcggatgaagtttta
ccgccttttgaaatcgttcaatggcaagattcccgctattacttccatggtaaaggctct
gcagggcataacagcgcggtgagccatgtgtttaccgccgctactcaagctaaagccgag
taa
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