Mannheimia succiniciproducens: MS1760
Help
Entry
MS1760 CDS
T00201
Symbol
rpoD
Name
(GenBank) RpoD protein
KO
K03086
RNA polymerase primary sigma factor
Organism
msu
Mannheimia succiniciproducens
Pathway
msu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
msu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MS1760 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msu03021
]
MS1760 (rpoD)
Transcription machinery [BR:
msu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MS1760 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GTP_EFTU
EXOC6_Sec15_N
Motif
Other DBs
NCBI-ProteinID:
AAU38367
UniProt:
Q65RP3
LinkDB
All DBs
Position
complement(1752985..1754871)
Genome browser
AA seq
628 aa
AA seq
DB search
MNQRRTSYMDHNPQSQLKLLIAQGKEQGYLTYAEVNDHLPEELVDTDQIEDIIQMINDMG
IQVLESAPDADDLMLSETIADEDAVEEATQVLSSVEAELGRTTDPVRMYMREMGSVELLT
REGEIDIAKRIEDGINEVQSAVAEYPEALDYLLKQYEQVEEGSVRLADLITGFVDLNAEE
ASEEISDLEEVLDDEDGDIPADALNDEEEDEESDEGDTSTDDSDNSIDPEVAREKFSALK
DQCVKTLEFIEKYGRTDNKVKEQIQVLSDIFTQFRLVPRQFDTLVLSMRSMMKQVRAEER
QIQRLAVDYAKVPKDDFQKAFIGNETSEQWLESLLQSKKTYVEKLQQRAPEISKSIVRLQ
QVETDTKLTVQQIRDIGERIAQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR
ISRQMLQEMGREASPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIED
STLELPLDSATAQSLKVATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRE
RIRQIEAKALRKLRHPSRSETLRSFLDE
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaggcggacgtcatatatggatcacaatccacaatctcaattgaaattgtta
atcgcccaagggaaagaacaaggttatttaacttatgcagaagtaaatgatcatcttcct
gaagaacttgttgatacggatcaaattgaagatattattcaaatgattaatgacatgggt
atccaagtgctggaaagcgcacctgatgccgatgatttaatgttgagtgaaaccattgcc
gatgaagatgcggtggaagaagcgactcaggtattgtcaagtgttgaagcggaattaggc
agaacaacggatccggtgcgtatgtatatgcgtgaaatgggaagcgttgaattattaacc
cgcgaaggcgagatcgatattgcaaaacgtattgaagacggcattaatgaagtacaaagt
gctgttgcagaatatccggaagctctggattatttactgaaacaatatgaacaagttgaa
gaaggttcggttcgtttggctgatttgatcacaggttttgttgatttgaatgcggaagaa
gcaagtgaagaaatttctgatttagaggaagtgcttgatgatgaagacggcgatattccg
gcggatgcgctaaatgatgaggaagaagacgaagagagcgatgaaggcgatacctcaacg
gacgatagcgataattctatcgatcctgaagtcgctcgtgaaaaattctccgcattaaaa
gatcaatgtgttaaaactttagaatttattgaaaaatacggacgcaccgataataaagta
aaagaacagattcaagttttgtctgatatttttactcaattccgtttagtccctcgccag
ttcgatacgttagtgttgtcaatgcgcagtatgatgaaacaagttcgagcggaagaacgt
caaattcaacgccttgccgtggattatgcgaaagtgccgaaagatgatttccaaaaggcc
tttatcggtaacgaaacctctgaacaatggttggaaagcttgttgcaaagcaaaaaaact
tatgtagaaaaattgcagcaacgggcaccggaaatcagtaaatctatcgtgcgtttacag
caggttgaaacggatacgaaattaaccgttcaacaaatccgcgatatcggcgaacgtatt
gctcaaggtgagttgaaagcccgtcgcgccaaaaaagaaatggtggaagcgaacttacgt
ttagtgatttctattgcgaaaaaatataccaatcgtggtttacaattcctggatttgatt
caggaaggtaatatcggcttgatgaaagctgtagataaattcgaatatcgccgcggttac
aagttttcaacttatgcaacctggtggattcgtcaggcgattacccgttctattgcggac
caggcgcgcaccattcgtattccggtgcatatgatcgaaaccattaataaattaaaccgt
atttcccgtcaaatgttacaggaaatgggccgtgaggcttcacctgaagagttggctgaa
cgtatgggaatgccggaagataaaatccgtaaggtgcttaaaatagccaaagagccgatt
tcaatggaaactccgattggtgatgacgatgattcgcatttaggtgatttcattgaggac
agcaccttggaattaccgttagattccgcaacggcacaaagcctgaaagttgccactcat
gaagtacttgaaggtttgaccccgcgtgaagcgaaagttttgcgtatgcgtttcggtatt
gatatgaatacggatcatactcttgaagaagtaggtaaacaatttgatgtaacccgtgaa
cgtattcgtcagattgaagcaaaagcattgcgtaaattgcgtcatccaagccgttcggaa
acgttgcgcagtttcctggatgaataa
DBGET
integrated database retrieval system