Mannheimia succiniciproducens: MS1760
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Entry
MS1760 CDS
T00201
Symbol
rpoD
Name
(GenBank) RpoD protein
KO
K03086
RNA polymerase primary sigma factor
Organism
msu
Mannheimia succiniciproducens
Pathway
msu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
msu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MS1760 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msu03021
]
MS1760 (rpoD)
Transcription machinery [BR:
msu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MS1760 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GTP_EFTU
EXOC6_Sec15_N
Motif
Other DBs
NCBI-ProteinID:
AAU38367
UniProt:
Q65RP3
LinkDB
All DBs
Position
complement(1752985..1754871)
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AA seq
628 aa
AA seq
DB search
MNQRRTSYMDHNPQSQLKLLIAQGKEQGYLTYAEVNDHLPEELVDTDQIEDIIQMINDMG
IQVLESAPDADDLMLSETIADEDAVEEATQVLSSVEAELGRTTDPVRMYMREMGSVELLT
REGEIDIAKRIEDGINEVQSAVAEYPEALDYLLKQYEQVEEGSVRLADLITGFVDLNAEE
ASEEISDLEEVLDDEDGDIPADALNDEEEDEESDEGDTSTDDSDNSIDPEVAREKFSALK
DQCVKTLEFIEKYGRTDNKVKEQIQVLSDIFTQFRLVPRQFDTLVLSMRSMMKQVRAEER
QIQRLAVDYAKVPKDDFQKAFIGNETSEQWLESLLQSKKTYVEKLQQRAPEISKSIVRLQ
QVETDTKLTVQQIRDIGERIAQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR
ISRQMLQEMGREASPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIED
STLELPLDSATAQSLKVATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRE
RIRQIEAKALRKLRHPSRSETLRSFLDE
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaggcggacgtcatatatggatcacaatccacaatctcaattgaaattgtta
atcgcccaagggaaagaacaaggttatttaacttatgcagaagtaaatgatcatcttcct
gaagaacttgttgatacggatcaaattgaagatattattcaaatgattaatgacatgggt
atccaagtgctggaaagcgcacctgatgccgatgatttaatgttgagtgaaaccattgcc
gatgaagatgcggtggaagaagcgactcaggtattgtcaagtgttgaagcggaattaggc
agaacaacggatccggtgcgtatgtatatgcgtgaaatgggaagcgttgaattattaacc
cgcgaaggcgagatcgatattgcaaaacgtattgaagacggcattaatgaagtacaaagt
gctgttgcagaatatccggaagctctggattatttactgaaacaatatgaacaagttgaa
gaaggttcggttcgtttggctgatttgatcacaggttttgttgatttgaatgcggaagaa
gcaagtgaagaaatttctgatttagaggaagtgcttgatgatgaagacggcgatattccg
gcggatgcgctaaatgatgaggaagaagacgaagagagcgatgaaggcgatacctcaacg
gacgatagcgataattctatcgatcctgaagtcgctcgtgaaaaattctccgcattaaaa
gatcaatgtgttaaaactttagaatttattgaaaaatacggacgcaccgataataaagta
aaagaacagattcaagttttgtctgatatttttactcaattccgtttagtccctcgccag
ttcgatacgttagtgttgtcaatgcgcagtatgatgaaacaagttcgagcggaagaacgt
caaattcaacgccttgccgtggattatgcgaaagtgccgaaagatgatttccaaaaggcc
tttatcggtaacgaaacctctgaacaatggttggaaagcttgttgcaaagcaaaaaaact
tatgtagaaaaattgcagcaacgggcaccggaaatcagtaaatctatcgtgcgtttacag
caggttgaaacggatacgaaattaaccgttcaacaaatccgcgatatcggcgaacgtatt
gctcaaggtgagttgaaagcccgtcgcgccaaaaaagaaatggtggaagcgaacttacgt
ttagtgatttctattgcgaaaaaatataccaatcgtggtttacaattcctggatttgatt
caggaaggtaatatcggcttgatgaaagctgtagataaattcgaatatcgccgcggttac
aagttttcaacttatgcaacctggtggattcgtcaggcgattacccgttctattgcggac
caggcgcgcaccattcgtattccggtgcatatgatcgaaaccattaataaattaaaccgt
atttcccgtcaaatgttacaggaaatgggccgtgaggcttcacctgaagagttggctgaa
cgtatgggaatgccggaagataaaatccgtaaggtgcttaaaatagccaaagagccgatt
tcaatggaaactccgattggtgatgacgatgattcgcatttaggtgatttcattgaggac
agcaccttggaattaccgttagattccgcaacggcacaaagcctgaaagttgccactcat
gaagtacttgaaggtttgaccccgcgtgaagcgaaagttttgcgtatgcgtttcggtatt
gatatgaatacggatcatactcttgaagaagtaggtaaacaatttgatgtaacccgtgaa
cgtattcgtcagattgaagcaaaagcattgcgtaaattgcgtcatccaagccgttcggaa
acgttgcgcagtttcctggatgaataa
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