Mannheimia succiniciproducens: MS1950
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Entry
MS1950 CDS
T00201
Symbol
srmB
Name
(GenBank) SrmB protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
msu
Mannheimia succiniciproducens
Brite
KEGG Orthology (KO) [BR:
msu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msu03009
]
MS1950 (srmB)
Enzymes [BR:
msu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MS1950 (srmB)
Ribosome biogenesis [BR:
msu03009
]
Prokaryotic type
rRNA helicases
MS1950 (srmB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_11
AAA_19
WSD
Motif
Other DBs
NCBI-ProteinID:
AAU38557
UniProt:
Q65R53
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All DBs
Position
1924874..1926262
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AA seq
462 aa
AA seq
DB search
MRYNFPQFYNLSHLRIFMPQPQFEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERD
VLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRVLVLTPTRELAMQVAQQAEELAQFT
KLSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRML
QMGFGQDAEKISAETRWRKQTFLFSATLEGELLVDFAERILTDPVKIDAEPSRRERKKIN
QWYYHADSYEHKVKLLARFIADEQVSKGIVFVRRREDVRELSEILRKRGIRSTYLEGEMA
QTQRNNAIDKLKNGIVTLLVATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAG
KKGTAVSFVEGHDYKYLGKIKRYTEELLKPRIIEGLEPRTKAPKDGEIKTVSKKQKAYIR
QKREEKRKTTQKKAKLRRQDTKNIGKRRTPKAVSEAQAKEIR
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
gtgcggtataatttcccccaattttataatcttagccatttgagaatattcatgccacaa
ccacaatttgaagatttcgatctttctcccgaactgttaaaagccttagcccaaaaaggt
tatgcgcgccctaccgccattcaatcggaagcgattccggcggcaatggacgagcgcgac
gtcttgggttcggcacctacgggaacgggcaaaaccgccgcttttttattaccggcgatt
caacatttgttggattatccacgccgtaaacccggtgcgccgcgggttttagtgttaacc
ccgacccgcgaactcgctatgcaggtggcacagcaagcggaggaattggctcaatttacc
aagttgagtattgccaccattacgggcggcgtcgcttatcaaaaccatggcgaaatattc
aataaaaatcaggatatcgtcgtggcaacgcccggccgtctgttgcaatatatcaaagag
gaaaactttgattgccgtgcggtggaaatccttatttttgatgaagcggatcgtatgttg
caaatgggctttggtcaggatgcggaaaaaatttccgctgaaacccgctggcgtaaacaa
acctttttgttctcggcgactttagaaggcgagttactggtggattttgccgaacgcatt
ttaacggatccggtgaaaatcgatgcggaaccaagccgtcgcgaacgcaagaaaatcaac
caatggtattaccatgcggacagctatgaacataaagtcaaactgttagcccgttttatt
gccgatgagcaggtcagcaaaggaattgtttttgtgcgccgccgcgaagacgtgcgggag
ctttccgaaattctgcgcaaacgcggtattcgcagtacttatttagaaggcgaaatggca
caaacccaacgaaataatgctatcgataaattaaaaaacggcattgttaccctgttagtc
gccactgacgttgccgcccgaggcattgatattgaagatatcagccatgtgatgaacttc
gacctgccctacaatgcggatacctatttacaccgtatcggtcgtaccgctcgtgccggc
aaaaaaggaaccgcggtatcttttgttgaaggtcatgattataaatatctcggcaaaatc
aaacgttataccgaagaattactcaaaccccgaattattgaaggtttagagcctcgtacc
aaagcaccgaaagacggcgaaatcaaaactgtatctaaaaaacaaaaagcgtacattcgc
caaaaacgggaagaaaagagaaaaacaacacagaaaaaagccaaattgcgccgtcaggat
actaaaaatatcggcaaacgccgcacacctaaggcggtatcagaagcgcaggcaaaagaa
atacggtga
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