Methanobacterium subterraneum: BK009_00705
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Entry
BK009_00705 CDS
T05275
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
msub
Methanobacterium subterraneum
Pathway
msub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BK009_00705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msub03019
]
BK009_00705
Messenger RNA biogenesis [BR:
msub03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
BK009_00705
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
BK009_00705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
RRP40_S1
KH_2
KH_KRR1_2nd
S1
DnaJ-X
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AUB59325
UniProt:
A0A2H4VMK1
LinkDB
All DBs
Position
134122..134862
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AA seq
246 aa
AA seq
DB search
MLLVEDKQIVVPGEILAEGDYHSGRGTFKEEDKVCSSLVGLVAVRDKKISVIPLQSKYIP
KRGDVVIGEVTDIRFSMWNLDINSPYSGILPAAEVFGKEKRELNRAFNVGDVLFLRVVDV
DEVKKVKLGLKGRGLGKFRGGILINITPTKVPRLIGKKGSMINMIKDQTRCEVVVGQNGV
VWVKGKPEMERVVQKVVKTIENEAHTSGLTDRIRDMLLELLGEKTEKTTEQQENKEEDEF
EEKLIQ
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
gtgttactagtagaagataaacagatagtagttccaggtgagatactggcagaaggggac
tatcactccggaagaggaactttcaaggaagaagacaaagtatgctcttccctggttggt
ctggtggctgttagggataaaaaaattagtgtaatacccttacagagtaaatacattcct
aaacgaggagatgtggtcattggtgaggtaactgacattcgattctccatgtggaatctg
gacataaactcaccttactccgggatattgcctgcagcagaagtctttggtaaggaaaaa
agagaactgaaccgggcattcaatgtgggggatgtgcttttcctgcgagttgtggatgtt
gacgaagtgaaaaaggtgaaactgggtcttaaaggaagaggactaggtaaattccgtggc
ggaattctgattaacataactcccaccaaggtaccccgactcataggtaagaaaggatcc
atgatcaacatgatcaaagaccaaacccgctgtgaagtagtggtaggtcaaaacggagtg
gtctgggttaaaggaaaaccagaaatggaaagagtggtgcaaaaagttgttaaaaccatt
gaaaacgaagcacacacctccggcctcactgacagaataagggacatgttactggaactt
ctcggagaaaaaaccgaaaagacaacagaacaacaagaaaataaagaagaagatgaattt
gaggaaaaattgattcagtaa
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