Methanobacterium subterraneum: BK009_00710
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Entry
BK009_00710 CDS
T05275
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
msub
Methanobacterium subterraneum
Pathway
msub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BK009_00710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msub03019
]
BK009_00710
Messenger RNA biogenesis [BR:
msub03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
BK009_00710
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
BK009_00710
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AUB59326
UniProt:
A0A2H4VMP5
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All DBs
Position
134866..135615
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AA seq
249 aa
AA seq
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MIIILTSRLIGDSNKGSLITSGTKKRPDGRAFDELRPLKIEAGVLERADGSSYVEIGDNK
VLAAVYGPRELHVRRLLKPNMAILRCRYNMAPFSVEDRKRPGPDRRSVEISKITAEALNP
AVFLEKFPRSTIDISIEVLQAEGGTRCAGITAASVALADAGIPMRDMVAACAAGKADGQV
VMDLSEWEDKEGEADLPIAMMPRTGDITLLQMDGHLTSDEFEKALDLAIKGCKIISEEQK
NAIKNRYGD
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
gtgattattattctaaccagcagattaattggagatagtaataaaggaagtctaataact
tctggcactaaaaaaagaccagatggaagagctttcgatgaactgagacccttgaaaata
gaagccggagttctggaaagagccgatggatcttcctatgtggaaattggtgacaacaaa
gttttagcagctgtttacgggcccagggaattgcacgtccgtcgattgttaaaacctaat
atggccatcctccgttgccgttacaatatggcaccattctcagtggaagaccgtaaaaga
ccaggaccagatcgtagatcagtggaaatatccaagatcactgcagaagcacttaaccct
gcagtattcctggaaaaattcccaagatcaaccattgatatttccatagaagtcctgcaa
gcagaaggaggaaccaggtgtgccggtatcacagcagcctcagtggccctggccgatgca
ggtatacctatgagggacatggtggcagcctgtgccgctggtaaagccgatggtcaagtg
gtaatggacctctctgaatgggaggataaggaaggagaagctgacttacccattgccatg
atgccccgaacaggggacataaccttgttacaaatggatggacacctaacctctgatgaa
ttcgagaaagcactggatctggccattaaaggatgcaagatcatcagtgaagaacagaaa
aatgccataaagaacaggtacggtgattaa
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