Methanobacterium subterraneum: BK009_03560
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Entry
BK009_03560 CDS
T05275
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
msub
Methanobacterium subterraneum
Pathway
msub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BK009_03560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msub03019
]
BK009_03560
Messenger RNA biogenesis [BR:
msub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BK009_03560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_3
BSH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
AUB59831
UniProt:
A0A2H4VP08
LinkDB
All DBs
Position
complement(771118..772608)
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AA seq
496 aa
AA seq
DB search
MTSIDFFGGVGEIGGNKIRINGNQSSFFLDFGMGFSHANDYLSEFLQPRKANGICDFIKL
GLLPYIDGIYREDYLRHVGLPYPNEPSVDGVLISHSHVDHVAYVHHLREDIPIYLSNESY
LILKALEDTGAASFSEYLHLKKSFYLEPKKRGEGYIRSRANVVDRDIQIVKPYQKFEIGD
FNLKSAPVDHSLPGASAFIGENDEETIIYTGDLRFHGRHPELTHKFIKEARKANPSIMIS
EGTRIDKEDNVTEIEIEQLAVDTVSMCKGLVVVNYPVRDLDRLLTFYKVAEDTGRKLVVS
LKQAYILNLFSGKGYEYPGLGDVMIYKPRKGWGLMGDDSFACVEDEWLCASDITSDQCLR
DYKKWERELLENDNVLTYHDLQEDPQDYIFRCDFFELKELIDIKPTNGVYIKSSTEPFDE
QMEINEKKVENWLKLFNLPLLNRGFHASGHANGREILEMIRKINPDKLYPVHTTHPDKFL
KLQEDGIEVIYPELSG
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagtattgatttttttggtggtgtgggtgaaattggtggtaacaaaatccggatt
aatgggaatcagtcttcttttttcctagactttggaatgggattttctcatgccaatgat
tatttgtcagagttcctgcaaccacgtaaagccaacgggatttgtgacttcataaaactg
ggcttattaccctatatagatggaatataccgggaggattaccttcgtcatgtgggtctt
ccctaccctaatgaaccttcagttgatggtgttttaattagtcactcccacgtggatcat
gtggcctatgtccatcatttacgggaggacattcccatttatctttccaacgagtcttac
ttgattttaaaagctttagaagatactggggctgcatcattttctgagtatctccacttg
aaaaaatcattttatctggagcctaaaaagcgtggtgagggttacattcgttcccgggct
aatgtggttgaccgtgatatccagattgtgaagccataccagaagtttgagattggggac
tttaacctgaaatctgccccggttgatcattctctgccgggagcttcagcatttatcggg
gaaaatgatgaagaaactattatatatactggtgatcttcgtttccatgggaggcacccg
gaacttacccataaattcataaaagaagctaggaaagccaatccctctattatgatcagt
gaaggtactcgtattgataaagaggataatgttactgaaatcgagattgaacagcttgct
gttgatacggtaagtatgtgtaaaggtctggtggtggttaactatccagtgagagatctg
gatcggcttttaaccttttataaagttgcagaggatacagggagaaaactggtggtgagt
cttaagcaggcttatattttgaacctttttagtggaaaaggttatgaatatcctggtttg
ggtgatgttatgatttacaaaccccgtaagggttggggtctcatgggagatgatagtttt
gcctgcgtagaggatgaatggttatgtgccagtgacattacctcggaccagtgcctcagg
gactacaagaaatgggaaagggaattgctggaaaatgacaatgtcttgacttatcatgat
ctccaggaagatccccaggattatattttccgttgtgattttttcgagttaaaggaacta
attgacataaaaccaacaaatggtgtatatatcaagtccagtactgaaccatttgatgaa
cagatggaaataaatgaaaagaaagtggaaaattggttgaagttattcaatttacccctt
ttaaatagaggcttccatgcatctggccatgccaatggccgggagattttggagatgata
cgtaagataaatccagataagttatatccagttcacaccactcaccccgacaaattcctg
aaactccaagaagatgggattgaagttatatatcccgaattaagtggataa
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