Methanobacterium subterraneum: BK009_06155
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Entry
BK009_06155 CDS
T05275
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msub
Methanobacterium subterraneum
Brite
KEGG Orthology (KO) [BR:
msub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msub03016
]
BK009_06155
Enzymes [BR:
msub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BK009_06155
Transfer RNA biogenesis [BR:
msub03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BK009_06155
Prokaryotic type
tRNA splicing ligases
BK009_06155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AUB60305
UniProt:
A0A2H4VQC8
LinkDB
All DBs
Position
complement(1289474..1290922)
Genome browser
AA seq
482 aa
AA seq
DB search
MVMEETLKKVRDCVWEVPGDYKKEMRVPGRIYLDDESIKTLEKGAVDQVANVACLPGIQK
FSIGLPDIHFGYGFSIGGVGAFSSRTGVISPGGVGFDINCGVRLLRTDLTYDEVQPRIKE
LIDVMFRNVPSGVGSKGKIRLREGEIDDVLDNGAKWAVENGYGWEEDLEYLEEKGCMADA
DSARVSDKAKKRGIPQLGSLGSGNHFLEVQKVEEIFDKEAAETFGLEEGQVTVLIHSGSR
GCGHQVCSDYLRTMDKAAKRYQINLPDRQLACAPVESEEAHDYFAAMSAAANYAWTNRQM
IVHWVRESFEQIFHRDAEDMGMKIVYDVAHNIAKKEIHTIKGKNNQLYVHRKGATRAFGP
GREELPSDYRKIGQPVLIPGTMGTSSYVLHGTQTAMDETFGSTAHGAGRQMSRAGAKRSY
RGEDILKILEGKGIYVKANSMPVVAEEAPGAYKDVDQVVKTAHTAGISRLVGRMVPMGVA
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggttatggaagaaactcttaaaaaggtacgtgattgtgtttgggaagttcctggagat
tataaaaaggaaatgagagtacctggtcggatatatcttgatgatgagtcaattaaaacc
ctggaaaagggagcagtagatcaggtggccaacgtagcctgcctaccagggatacagaaa
ttttccataggcctacctgacatccacttcggctacggattcagcataggtggggtcgga
gctttcagcagtcgaaccggagttataagtcctggaggggtgggatttgatataaactgt
ggtgtaagacttctccgcacagatctaacctatgatgaggttcagccccgaatcaaagaa
ctgattgatgtcatgttccggaacgtaccctcaggtgtagggagcaaaggaaaaataaga
ctccgagagggtgaaatcgatgatgtcctggacaacggtgccaagtgggctgtggaaaat
ggttacggctgggaagaagacctggaatacctggaggagaagggatgcatggctgatgcc
gactcggcccgggtgagtgataaggccaagaaaaggggaataccccagctgggcagcctg
ggctcgggaaaccacttcctggaagttcagaaagtagaggaaatattcgataaagaagcc
gctgaaacattcggcctggaagaaggacaggtaaccgtactcatccattctggaagtagg
ggatgcggacaccaggtttgcagtgattacctgcgtaccatggacaaggcagccaaacgt
taccagatcaacctacctgacagacaactagcctgtgcccctgtagaatcagaagaagcc
catgattatttcgcggcaatgtctgctgctgccaactacgcctggaccaaccgacaaatg
attgttcactgggtacgggaatcctttgaacagatattccatagggatgccgaagacatg
ggtatgaagattgtttatgatgtggcccataatattgccaagaaagagatacacaccatt
aaaggaaagaacaatcagctctatgtccatcgaaaaggagccactcgtgcatttggacct
ggaagagaggaattaccatcagattatcggaaaattggtcagcctgtactcatccctgga
accatgggtacatcttcctatgtcttacacggtacacagactgcaatggatgaaaccttt
ggatccactgcccatggtgccggacgccagatgagccgtgccggtgccaaacgtagctac
cgtggagaagacatcctcaaaatcctggaaggtaagggcatatatgtgaaggccaattcc
atgccagtggtggcagaagaagccccaggagcctataaagatgtggaccaagtggttaaa
accgcacacacagcaggtatctctagattagtgggtagaatggtgccaatgggagtagcc
aagggataa
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