KEGG   Methanobacterium subterraneum: BK009_10580
Entry
BK009_10580       CDS       T05275                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
msub  Methanobacterium subterraneum
Pathway
msub03030  DNA replication
msub03410  Base excision repair
msub03420  Nucleotide excision repair
msub03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msub00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BK009_10580
   03410 Base excision repair
    BK009_10580
   03420 Nucleotide excision repair
    BK009_10580
   03430 Mismatch repair
    BK009_10580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msub03032]
    BK009_10580
   03400 DNA repair and recombination proteins [BR:msub03400]
    BK009_10580
Enzymes [BR:msub01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BK009_10580
    6.5.1.6  DNA ligase (ATP or NAD+)
     BK009_10580
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BK009_10580
DNA replication proteins [BR:msub03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    BK009_10580
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     BK009_10580
DNA repair and recombination proteins [BR:msub03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BK009_10580
   NER (nucleotide excision repair)
    Other NER factors
     BK009_10580
   MMR (mismatch excision repair)
    Other MMR factors
     BK009_10580
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AUB61083
UniProt: A0A2H4VAH9
LinkDB
Position
2199628..2201301
AA seq 557 aa
MLYKDLVEVYQDLDSTTKRLEKTDILAKFLSKVGDEEPELLPIVTLLCLGRIFPTWSEEE
LGIGSKLLMKAISQAVGVSPEDVENRMRDTGDIGEAAEELYLKKSQVTLFSRPITIGKVH
RNLVKMAEISGNRAQYKKIDYLMELLSSASPAEAKYITRTVLEELRVGVGEGTIRDAISQ
AFNIPKEVTERAHMLTNDMGLVAEVARMEGGEGLRKLTLKPGKPVKPMLAQLSPSITESV
GEMGWAICETKYDGIRVQIHRHGDKIDIFTRRLENISLALPEISDYIEKSLPHEDFIVEG
EIIASRDGKPISFQYMLQRVRRKYEIDKMVSKIPLTVYLFDVLYYHRPVLDEPLQERRKT
LESIVKVLEGKLELSAQVKVTLEEIGKAQDLFETSIKGGHEGIMIKDPHAPYMPGIRGKK
MLKLKAEPETLDLVVVGGTYGNGKRAHLIGSYLMALQDEDNQLKPLAYAATGLDDQTLLE
LSEMVEPLIISKKGRQVKIEPSIIMEIAFSEIVESPESETGYSLRFPVVKRIRNDLGLDE
IDTLERIESIFRNSEKT
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgctttacaaggatttagtggaagtttaccaggatctggactccaccaccaagcgtctg
gaaaagactgatattttggccaaatttttgtctaaagtaggggatgaagaacctgaactc
ctacctatagtaaccctactatgtctgggtcgaatttttcccacttggagtgaggaagaa
ctgggaatcggatcaaaattactgatgaaagccatttcacaggcagttggagtttctcct
gaggatgtggagaatcgtatgcgggacacgggggatattggtgaggctgcagaggaatta
tatctcaaaaaaagccaggtaaccctgttcagccgaccaataaccataggaaaagtacac
cgtaatctggtgaagatggctgaaatttcaggtaaccgggcccaatacaaaaaaatagac
tatttaatggagctattgtcatcagcatcccctgcagaggccaagtacatcacccgaacc
gtactggaagaactacgtgttggtgtgggggaaggaaccatccgtgatgcaatttcacag
gcatttaacatacccaaagaagttacagaacgagcacatatgttaactaacgacatggga
ttggtagcggaggtggcccggatggaaggtggagaagggctgcgtaaactaactcttaaa
cctggaaaaccagtaaaacccatgctggcacagttatctccaagcataactgagagtgtg
ggggaaatgggctgggccatctgcgaaactaaatatgatgggataagggttcaaattcac
cggcatggtgataaaatagatattttcaccagaaggctggaaaatatcagcctggcactt
cctgaaatctctgactacattgaaaaatcccttccacacgaggatttcattgtggagggt
gaaataatcgccagtcgggatggtaaacccatatcattccagtacatgctgcaaagagtg
cgtaggaaatatgaaatcgataaaatggtttctaaaatccctttaactgtttatctattt
gatgtgctctattatcataggcccgttcttgatgaacctctccaagaacggagaaaaacc
ttagaatcaatagtaaaagtgttggaaggtaaactagagctttctgcccaggttaaagtc
actctcgaggagatagggaaggctcaggacctctttgaaacatcaattaagggtggtcat
gagggtataatgatcaaagaccctcatgcaccatacatgccaggtataaggggtaagaag
atgctaaaattgaaggcagaaccggaaaccctggatctggtggtggtgggtggaacctac
ggaaatggcaagcgagctcatctcattggatcctatcttatggctcttcaggatgaggac
aaccagctcaagcccctggcttacgctgcaactggtttggatgatcaaacattgttggag
ctttctgaaatggtagaacctctaataatcagtaaaaaaggtaggcaagtgaagatcgaa
ccatccataatcatggaaattgccttcagtgaaatagtggaaagcccggaatccgaaaca
ggatattcactacggttcccggtggttaaaaggattcgtaacgacttagggttggatgag
attgatactctggagagaattgaatcaatcttcaggaactcagagaaaacttga

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