Methanobacterium subterraneum: BK009_12105
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Entry
BK009_12105 CDS
T05275
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
msub
Methanobacterium subterraneum
Pathway
msub03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msub00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
BK009_12105 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msub03021
]
BK009_12105 (tfb)
Transcription machinery [BR:
msub03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
BK009_12105 (tfb)
Prokaryotic type
Archaeal type
TFB
BK009_12105 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Ribosomal_S27e
Sigma70_r4
Zn_ribbon_LysW
Lar_restr_allev
RPA_interact_C
HTH_Tnp_ISL3
BRF2-like_C_cyclin_rpt
UPF0181
Cyclin_C
Cas_Cas5d
A2L_zn_ribbon
Zn_Ribbon_YjdM
Zn_ribbon_tTFIIB
Zn_ribbon_PaaD
Zn_ribbon_Elf1
Motif
Other DBs
NCBI-ProteinID:
AUB61552
UniProt:
A0A2H4VF36
LinkDB
All DBs
Position
complement(2498586..2499521)
Genome browser
AA seq
311 aa
AA seq
DB search
MKQDMSEIEKIETKCPECQSEKLINDHERGEIVCGSCGLVIDDNLVDMGPEWRAFDHEQR
DKRTRVGAPITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATE
RNLAFALSELDRDSSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRC
NVPRTLDEIAEVSRVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELNLSGEVQSK
AIEIIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKE
LTEQLDMGVTL
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaggatatgtctgagattgaaaaaatcgagactaaatgtcctgaatgtcagtct
gaaaaacttataaatgatcatgaacgtggagaaatcgtttgtggttcctgtggtctggta
attgacgacaacctggtggatatgggtcctgaatggagggccttcgaccatgaacaacgt
gataaaaggaccagggtaggtgcacctatcacctacaccatccacgataagggtctttcc
accatgatcgactggagaaacaaggacatctacggccgtgacatccccgccaggaaccgg
gcccagtggtaccggctcaggaaatggcagagaaaaatcaggatttcaggtgcaactgaa
cgtaacctagcctttgccctctcagaactggaccgtgactcatcacgactgggactcccc
agaagtgtgcgagaagctgcatcagtagtataccgtaacgctgtggagaacaaactcatc
agaggaagaagcatagagggagtggttgcagcatcactttacgctgcttgcagaaggtgt
aatgttccccgaaccctggatgagatagccgaagtatcccgtgtaagcaagaaagaagtg
ggtagaacctaccgtttccttaccagggaactgaacatcaaactaccaccaaccagtcct
gtggattacgtgccccgttttgccagtgaactgaacctatcaggagaagttcaatccaaa
gccatagaaatcatagaaaaagccatggaaaaaggtttgacctccggaagggggcctaca
ggagttgctgccgctgccctttacatcgcatcagtattactcggtgaaaggaaaacccaa
cgtgacgtggccgacatagcaggagttaccgaagttaccattcgtaacaggtacaaagaa
ctcacagaacagttagacatgggtgttacactctag
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