Metamycoplasma subdolum: R9C05_00155
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Entry
R9C05_00155 CDS
T09522
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
msud
Metamycoplasma subdolum
Pathway
msud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R9C05_00155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msud03019
]
R9C05_00155
Messenger RNA biogenesis [BR:
msud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R9C05_00155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
WPB50564
LinkDB
All DBs
Position
29106..30875
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AA seq
589 aa
AA seq
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MKPTKIFGLGGMQEIGKSTLIIEYDQIFIIDTGIKFHDVFTTGINGSIPDYTYLQKNQER
IAGLFITHGHEDHIGGVPYLVKQVDVQRIYAPKIAIQYLKLKFEDMRIKKHVEFIEITKD
AVFEFNTCSVDFWTAQHSIPDAFGIRVKTPNGSLMMTGDFRFDYTPIGNLTDFAKLKQMG
DEGLDVLFSDSTNAMRPNHSPSESDILQDIGKYMKEAKGKIIITAFASNLTRIKAIIELA
ASMKKKVIAFGRSMVDGIDIGRRLGYIDAPEEVFIDKKSLNKYNENELLILTTGSQGEEL
AGLAKMSYQKHPHVTIKPGDTIIFSSSPIPGNRSKIELLVNRLYKLGAIIRENGVDGYLH
TSGHAYRDEHLKIFELTKPKYFMPYHGEFRMSVVHGYTAIESGVDPKNVIVAKLGEVYHL
VDHKITLSKEKVYFGPVFIDGNILSVSNSQILKERMELGQNGFLHAIVAINKEKNLILGK
PRIVSRGAFYVKNSLALVEEAKRLVHGAILYTIKNSTNWTVPQLKQLIIDRLSPFFYKHK
RRNVVIIPTILFTTHSKALVEDNPNLTDITIEEEKEGGKTLRHESKEYI
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaactaaaatttttggtttaggtggaatgcaagaaattggtaaatctacctta
atcattgaatatgaccaaatttttataatagatacaggaatcaaatttcacgatgttttt
acaactggaattaatggttcaattcctgactacacttatttacaaaaaaatcaagaaaga
attgccggcctttttataacacatggtcatgaagatcatattggtggtgtcccttattta
gttaaacaagttgatgttcaaagaatatatgcccctaaaatcgcaattcaatatttaaaa
cttaaatttgaggacatgagaatcaaaaaacatgttgaatttattgaaataaccaaagat
gcagtttttgaattcaacacatgttcagttgatttttggacagcacaacattcaattcct
gatgcttttggaattcgtgttaaaactcctaatggttcattaatgatgactggcgacttt
agatttgactatactccaataggaaatttaactgactttgcaaaacttaaacaaatgggc
gatgaaggacttgatgttttattttctgactcaactaatgcaatgcgtccaaatcattct
ccttcagaatctgatattttacaagacattggaaaatatatgaaagaagcaaaaggcaaa
attatcattactgcttttgcctcaaacttaacaagaattaaagcaatcattgaacttgct
gcttcaatgaagaaaaaggtcattgcttttggtagatcaatggttgatggaattgacatt
ggtagaagacttggttatattgatgcacctgaagaagtatttattgataaaaaatcactt
aataaatataacgaaaatgaacttttaattttaacaactggttcacaaggtgaagaactt
gctggacttgctaaaatgagttatcaaaaacatcctcatgttactatcaaaccaggtgat
acaattattttttcatcttcaccaattcctggaaatagatcaaaaattgaacttttggtt
aatagactttacaaacttggtgcaataattcgtgaaaatggtgttgatggatatctgcat
acatcaggtcatgcttatcgcgacgagcatcttaagatttttgaactaactaaacctaaa
tattttatgccttatcatggcgaatttagaatgagtgtagttcatggctatactgccatt
gaatcaggagttgatcctaaaaatgttattgttgctaaattaggtgaagtttatcattta
gttgatcacaaaataactctttccaaagaaaaggtttattttggacctgtatttattgat
ggaaatatcttgtctgtttcaaattctcaaatcttaaaagaaagaatggaacttggacaa
aacggatttttacatgcaattgttgcaattaataaagaaaaaaatcttattttaggtaaa
ccaagaatagtttcgcgtggtgccttttatgttaaaaattcgcttgctttagtagaagaa
gcgaaaagattagttcatggagcaatactgtatacaatcaaaaactcaactaattgaaca
gtacctcaattaaaacaattaattattgatagactttcaccattcttctataaacacaaa
agaagaaacgttgttataattccaactattttatttacaactcactcaaaagcattggtt
gaagataaccctaacttaactgatattactattgaagaagaaaaagaaggtggaaaaacc
ttgagacatgaaagtaaagaatatatttaa
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