Microbacterium sufflavum: KV394_10625
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Entry
KV394_10625 CDS
T10224
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msuf Microbacterium sufflavum
Pathway
msuf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msuf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KV394_10625 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msuf03400
]
KV394_10625 (mfd)
Enzymes [BR:
msuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KV394_10625 (mfd)
DNA repair and recombination proteins [BR:
msuf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KV394_10625 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UPL11540
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All DBs
Position
2186682..2190248
Genome browser
AA seq
1188 aa
AA seq
DB search
MTVPGILRALEEASLFRDALAWAHTDADLGLVDGLDAPTLAGLLAKRAAAGHPAALLAVV
PTGRRAETLAAAMSAYVPDAEVLTFPAWETLPHERLSPSPDTVGQRLQTLRRIAEWSGDH
PLVVVASVRAALQPIAGNLGEIAPLDLAVGSRGHELDHVAEQLVERAYSRVDMVSRRGEF
AVRGGILDVFPPTSEHPYRVEFFGDEIDQIRAFSVADQRSLPGDVPAVDLPPSRELLLTA
DVRDRARALIGGFPAIAGMLEKMAEGIPVEGMESLLPAVAGPLKSLVEYLPPGSATAVVD
PERATARAITLGDTNREFLDAAWSAATSGASAPIDLGAGDFLTVADLRDVVRDRGGVWWR
LSPFGIGDADPESVEASAVIPSFHGNVDGAIAFVDAKVADGWRVVVIATGHGLVDRARDV
LSDRGIAARAVESLTEAPDPGVATLVTGAVEAGFQVPEAKLAVLTDNEFYGRTIGGDQRV
VKKLASRRKNVVDPLQLKQGDFVVHATHGIGRFVEMTQREVSTGGRHAAKSVRDYLVLEY
APSKRGYPGDKLFVPTDQLDLLSKYVGGEAPTLSKMGGSDWAQAKGKARKAVRDIAVELV
KLYSARMSAKGHAFGPDTPWQRELEEAFPFAETHDQLQTIDEIKADMERPIPMDRLLSGD
VGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFTERFAGFPVKVRPLSRFQTD
KEAKLTLQGLLDGTVDMVIGTHRILTDQVMFKDLGLMIIDEEQRFGVEHKDALKKMKTNV
DILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILSFVGPRSDKQIAAAIRREILRE
GQVFFVHNRVQSIQRIAAQLAELVPEARIAVAHGQMGEHALEQVVDDFWERKFDVLVSTT
IIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDDMKPLSETAADR
LQTIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVATFRGE
EVETGQELRLELPLDARIPEDYIDSERLRLEAYQKLSAASAATAKDDAIDLVQEELIDRY
GTPPEEVAGLFAIARLRRRAARAGLTDVVAMGSNLRIAPARLEDSIKVRLQRLYPKAKLV
AGGEALVVPMPTVAAAVGVGVEPLPDAQLLEWVGQLFTAIFPEPATTP
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
gtgactgttccggggattctgcgcgccttggaagaggcgtctctgtttcgtgacgctctc
gcctgggcgcataccgacgccgacctcggactggtcgacggcctcgatgcgcccacgctc
gccgggctcctcgccaagcgcgccgcggccgggcaccccgccgcgttgctcgccgtggtg
ccgaccgggcgccgggccgagacgctcgccgcggcgatgtcggcctacgtgcccgatgcc
gaggtgctcacgttcccggcatgggagaccctgccgcacgagcggctgagcccgagcccc
gacaccgtcgggcagcgcctgcagaccctgcgccgcatcgccgagtggtcgggtgatcac
ccgctcgtggtcgtcgcctccgtgcgcgccgcgctgcagccgatcgccggcaacctgggc
gagatcgccccgctcgacctcgccgtcggcagccgggggcacgagctcgaccacgtcgcg
gagcagctggtcgaacgcgcatactcccgcgtggacatggtgtcgcggcgcggtgagttc
gccgtgcgcggcggcatcctcgacgtgttccctcccacgtcggagcacccctaccgcgtg
gagttcttcggcgacgagatcgaccagatccgggcgttctccgtggccgatcagcgctcg
ctccccggcgacgtcccggcggtcgacctgccgcccagccgcgagctgctgctcaccgcc
gacgtgcgcgacagggcgcgcgcgctgatcggcgggttcccggccatcgcgggcatgctc
gagaagatggccgagggcatcccggtcgagggcatggagtcgctgctgcccgccgtggcc
ggtccgctgaagtcgctcgtggagtacctgccgcccggcagcgcgaccgcggtggtcgac
cccgagcgggcgaccgcgcgggcgatcaccctcggcgacacgaaccgcgagttcctcgac
gccgcgtggagcgcggcgacctccggggcctcggctcccatcgacctcggcgcgggcgac
ttcctcacggtcgccgacctgcgcgacgtggtgcgcgaccgcggcggcgtgtggtggcgg
ctcagcccgttcggcatcggcgacgccgacccggagagcgtcgaggcgtcggcggtcatc
ccgtcgttccacggcaacgtcgacggggcgatcgccttcgtcgacgcgaaggtcgccgac
gggtggcgcgtcgtggtgatcgcgacgggacacgggctcgtcgaccgcgcgcgcgacgtg
ctgtccgaccggggcatcgcggcccgcgcggtggagtcgctgaccgaggcccccgacccc
ggggtcgcgacgctcgtgaccggtgcggtcgaggcggggttccaggtgccggaggcgaag
ctcgccgtcctcaccgacaacgagttctacggccgcacgatcggcggcgaccagcgcgtg
gtgaagaagctcgcctcgcgccgcaagaacgtggtcgaccccctccagctcaagcagggc
gacttcgtggtgcacgccacgcacggcatcggccgcttcgtggagatgacgcagcgcgag
gtgtcgacgggcggccgccacgccgcgaagtccgtgcgcgactacctcgtgctggagtac
gccccgtccaagcgcggctacccgggtgacaagctcttcgtacccaccgaccagctcgac
ctgctctccaagtacgtcggcggtgaggccccgacgctgtcgaagatgggcggcagtgac
tgggcgcaggccaagggcaaggcccgcaaagccgtgcgcgacatcgcggtcgagctcgtg
aagctctactccgcgcgcatgagcgccaaggggcacgcgttcggtccggacaccccgtgg
cagcgcgagctggaggaggcgttcccgttcgccgagacccatgaccagctgcagaccatc
gacgagatcaaggccgacatggagcggcccatcccgatggaccggctgctgtcgggagac
gtcggcttcggcaagaccgaggtcgcggtgcgcgcggcgttcaaggccatccaggacggc
aagcaggtcgcgatgctcgtgccgacgacgctgctggtgaagcagcacctggagacgttc
acggagcgcttcgccggcttcccggtgaaggtgcggccgctgtcgcgcttccagaccgac
aaggaggcgaagctcacgctgcagggccttctcgacggcacggtcgacatggtcatcggc
acgcaccgcatcctcaccgatcaggtgatgttcaaggacctcggcctgatgatcatcgac
gaggagcagcgctttggcgtggagcacaaggacgcgctgaagaagatgaagaccaacgtc
gacatcctcgccatgagcgcgaccccgatcccgcgcaccctggagatggcggtcaccggc
atccgggagatgtccacgctcgcgacgccgccggaggaccggcacccgatcctctcgttc
gtcgggccgcgcagcgacaagcagatcgccgccgccatccggcgcgagatcctgcgcgag
ggccaggtgttcttcgtgcacaaccgcgtgcagtccatccagcggatcgcggcccagctc
gccgagctcgtgccggaggcgcgcatcgcggtcgcgcacgggcagatgggggagcatgcg
ctggagcaggtggtcgacgacttctgggagcgcaagttcgacgtgctcgtctcgaccacc
atcatcgagaccggcctcgacatctccaacgccaacacgatcatcatcgaccgcgccgac
aagtacggcctgagccagctgcaccagctccgcggacgcgtgggccgcggacgcgagcgc
gcctacgcgtacttcctctacgacgacatgaagccgctgagcgagaccgcggccgaccgc
ttgcagaccatcgcggtcaacaacgacctcggctcgggcatgcaggtggcgctgaaggac
ctggagctgcgcggggcgggcaacctgctcggcgcggagcaggcggggcacatcgccggc
gtcggcttcgacctgtacctgcgcatgatcggtgaggccgtcgcgacgttccgcggcgaa
gaggtcgagacggggcaggagctgcgactggagctgccgctggacgcgcgcatccccgag
gactacatcgatagtgagcgcctgcgcctggaggcgtaccagaagctgtccgccgcctcg
gccgcgaccgccaaggacgatgcgatcgacctcgtgcaggaggagctcatcgaccgctac
ggcaccccgccggaagaggtcgccgggctcttcgcgatcgcgcgactgcgccgcagggcc
gcccgcgccgggctcaccgacgtggtggcgatggggtcgaacctccgcatcgccccggcg
cggctggaggactccatcaaggtgcggctgcagcggctctacccgaaggcgaagctcgtg
gccgggggagaggcgctggtggtgccgatgcccaccgtcgccgcggccgtcggcgtcggt
gtggagccgctgcccgacgcgcagctgctggagtgggtcggccagctgttcaccgcgatc
ttcccggaacccgccacgaccccgtag
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