Microbacterium sufflavum: KV394_12540
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Entry
KV394_12540 CDS
T10224
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
msuf Microbacterium sufflavum
Pathway
msuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KV394_12540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msuf03019
]
KV394_12540
Messenger RNA biogenesis [BR:
msuf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KV394_12540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
UPL11890
UniProt:
A0ABY4IHZ4
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Position
2597743..2599419
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AA seq
558 aa
AA seq
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MSIPLAEPSALDEGTLRVIPVGGLGEVGRNMTVFEYDGKILIVDCGVLFPEEHQPGVDLI
LPDFEPIRDRLDDIVGVVLTHGHEDHIGAVPYLLRLKSDIPLIGSGLTLALVEAKLKEHR
IKAFTLTVKEGQKERVGPFDLEFVAVNHSIPDALAVAIRTPAGMVLATGDFKMDQLPLDG
RITDLRAFSRLGEEGVDLFLVDSTNADVPGFTPTERSIGPVLDQVIGKAPRRVIVASFSS
HVHRVQQVIDAAHAHGRRVAFLGRSMVRNMTIAEQLGYLKVPAGVLIDFKKARDLPDEQI
VYMSTGSQGEPMAVLSRMANLDHAIEVSEGDTVILASSLIPGNENAVYRVIDGLTKLGAN
VVHKANARVHVSGHAAAGELLYCYNILKPKNVLPVHGEYRHLIANAKLAQDTGIPEENTI
IASNGTVIDLKDGVARVSGQLDLGFVYVDGSTVGEITDADLKDRRILGEEGFISVIVVVD
AATGRIISGPEIHARGVAEDDSVFDDVAPKIVAALKEASGNGVRDTHALSQVVRRTIGRW
VNQKLRRRPMIVPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtccattcccctggccgaaccgtccgctctcgacgaaggaacgctgcgggtcatcccg
gtcggcggcctcggcgaggtcggccgcaacatgaccgtgttcgagtacgacggcaagatc
ctgatcgtcgattgcggcgtgctgttccccgaggagcaccagcccggcgtcgacctgatc
ctgcccgacttcgagcccatccgcgaccgtctcgacgacatcgtcggcgtggtgctcacg
cacgggcacgaggaccacatcggcgccgtgccgtacctgctgcgcctgaagagcgacatc
cccctgatcggctccggcctgacgctcgcgctcgtcgaggcgaagctcaaggagcaccgg
atcaaggcgttcaccctcaccgtcaaggaggggcagaaggagagggtcgggccgttcgac
ctcgagttcgtggccgtcaaccactccatccccgacgcactcgccgtcgcgatccgcacg
ccggcgggcatggtgctcgcgacgggcgacttcaagatggatcagctgccgctggacggc
cgcatcaccgacctgcgcgcgttctcgcggctgggggaggagggcgtcgacctcttcctc
gtcgactccacgaacgccgacgtccccgggttcaccccgaccgagcgctcgatcgggccg
gtcctcgaccaggtcatcggcaaggctccgcgccgcgtcatcgtcgccagcttttccagc
cacgtgcaccgcgtgcagcaggtgatcgacgccgcgcacgcgcacggacggcgcgtcgcc
ttcctcggtcgcagcatggtgcgcaacatgaccatcgccgagcagctcggctacctcaag
gtgcccgcgggcgtgctgatcgacttcaagaaggctcgcgacctgcccgacgagcagatc
gtctacatgtcgacggggtcgcagggcgagccgatggcggtgctcagccgcatggcgaac
ctcgaccacgcgatcgaggtgagcgagggtgacacggtcatcctcgcctcgagcctcatc
cccggcaacgagaacgcggtctaccgcgtgatcgacggcctcacgaagctcggcgcgaac
gtggtccacaaggcgaacgcgcgggtgcacgtgtccggccacgcggcggcgggtgagctg
ctctactgctacaacatcctcaagccgaagaacgtcctcccggtgcacggggagtaccgc
cacctgatcgccaacgccaagctcgcgcaggacacgggcatcccggaggagaacacgatc
atcgcctccaacggcaccgtgatcgacctcaaggacggcgtggcccgcgtgagcggacag
ctcgacctcgggttcgtgtatgtggacggttcgacggtgggcgagatcaccgacgccgat
ctgaaggaccggcgcatcctgggcgaggaggggttcatctcggtcatcgtcgtggtggac
gcggcgaccggtcgcatcatctccggccccgagatccacgcccgcggcgtggcggaggac
gactcggtcttcgacgacgtcgcgccgaagatcgtcgccgcgctcaaggaggcttcgggc
aacggcgtgcgcgacacgcacgccctctcccaggtcgtgcgccgcacgatcggccgctgg
gtcaaccagaagctccgtcgccgcccgatgatcgtgcccctcgtcatcgaggcctga
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