Microbacterium sufflavum: KV394_13295
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Entry
KV394_13295 CDS
T10224
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msuf Microbacterium sufflavum
Pathway
msuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KV394_13295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msuf03019
]
KV394_13295
03009 Ribosome biogenesis [BR:
msuf03009
]
KV394_13295
Enzymes [BR:
msuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KV394_13295
Messenger RNA biogenesis [BR:
msuf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KV394_13295
Ribosome biogenesis [BR:
msuf03009
]
Prokaryotic type
rRNA helicases
KV394_13295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
Cas3-like_C_2
AAA_33
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UPL12915
LinkDB
All DBs
Position
complement(2751657..2753492)
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AA seq
611 aa
AA seq
DB search
MPTDAPDESPATPGFEELGITGPVLKAIRDLGYETPSPIQAATIPTLLSGRDVVGMAQTG
TGKTAAFALPVLERLDTAQKTPQALVLAPTRELALQVCEAFESYASRMKGIHVLPVYGGQ
GYGVQLSALRRGVHVVVGTPGRIMDHLAKGTLDLSELQYLVLDEADEMLKMGFAEDVEQI
LAQTPEEKQVALFSATMPAQIRRLAQQYLRDPEEITVKSKTATNTNITQRYLVVSYAQKV
DALTRILEVENFDGMIVFVRTKNETETLAEKLRARGYSAAAINGDVPQVQRERSVNQLKD
GKLDILVATDVAARGLDVERISHVINFDIPTDTESYVHRIGRTGRAGRTGDAISFITPRE
RYLLKHIEKATRQTPTQMQLPTTEDVNTTRLARFDDAITTALSETARIDAFRDIIAHYVR
HHDVPESDVAAALAVVAQGERPLLLDPADDPLARAVAADNRPPRERAPRDARETREPRER
RGRGDYAAYRIEVGRRHRVEPRQIVGALANEGGLGRDDFGAINIRPDFSIVELPANLDPA
VLEKLRDTRISGRLIEIAPDRGPGARRGAARDRGNDDSAGRGYRGDRHDRDDRGPRGPRE
DKPFRKPRHKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgcccaccgacgcccccgacgagtcccccgcaacccccggattcgaggagctcggcatc
accgggcccgtcctcaaggccatccgagacctcggctacgagaccccctccccgatccag
gccgcgacgatcccgaccctgctgtcgggtcgcgacgtggtgggcatggcgcagaccggt
accggcaagaccgcggccttcgcgctccccgtgctggagcgcctcgacaccgcacagaag
accccgcaggccctcgtgctcgcccccacgcgcgagctcgcgctgcaggtgtgtgaggcg
ttcgagtcgtacgcctcacgcatgaagggcattcacgtgctgcccgtgtacggcggtcag
gggtacggcgtgcagctgtcggcgctgcgccgcggtgtgcacgtggtcgtcggaaccccc
ggtcgcatcatggaccacctcgccaagggcacgctcgacctctcggagctgcagtacctg
gtgctcgacgaggcggacgagatgctgaagatgggcttcgcggaggatgtcgagcagatc
ctcgcccagacgccggaggagaagcaggtcgcgctgttctccgccacgatgcccgcccag
atccggcgcctcgcgcagcagtacctccgcgaccccgaggagatcacggtcaagtccaag
accgcgaccaacacgaacatcacccagcggtacctcgtggtgtcgtacgcgcagaaggtg
gacgccctcacgcgcatcctcgaggtggagaacttcgacgggatgatcgtcttcgtccgc
accaagaacgagaccgagacgctcgcggagaagctccgcgctcgcggctactccgccgcc
gcgatcaacggcgacgtgccccaggtgcagcgcgagcgcagtgtcaaccagctcaaggac
ggcaagctcgacatcctggtcgcgaccgacgtcgccgcgcgcggtctcgacgtggagcgc
atcagccacgtcatcaacttcgacatccccaccgacaccgagtcgtacgtgcaccgcatc
ggtcggaccgggcgcgccgggcggaccggcgacgcgatcagcttcatcaccccgcgcgag
cgctacctgctgaagcacatcgagaaggccacgcgtcagacgccgacgcagatgcagctg
ccgaccacggaggacgtcaacaccacgcgcctcgcgcgcttcgacgacgccatcacgacc
gcgctgtccgagaccgcccgcatcgacgcgttccgcgacatcatcgcccactacgtgcgc
caccacgacgtgccggagagcgatgtcgccgcggctctcgccgtggtcgcgcagggtgag
cgtccactcctcctcgaccccgcggacgacccgctcgcccgagctgtcgccgccgacaac
cgtcctccgcgtgagcgcgcaccgcgcgacgcgcgggagacgcgtgagcccagggaacgc
cggggccgtggcgactatgcggcgtaccgcatcgaggtcggacgacggcaccgcgtggag
ccgcggcagatcgtcggcgcgctcgcgaacgagggcggcctcggtcgcgacgacttcggc
gccatcaacatccgccccgacttctcgatcgtggaactgccggccaacctcgaccccgcc
gtcctcgagaagctccgcgacacccgcatctccgggcggctgatcgagatcgcgcccgac
cgtggccccggggcacgccggggagctgcgcgcgaccgcgggaacgacgacagcgcgggc
cgcggctaccgcggtgaccgccatgaccgtgacgatcgcggaccccgcggtccccgcgag
gacaagccgttccggaagccccgtcacaagagctga
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