Microbacterium sufflavum: KV394_15190
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Entry
KV394_15190 CDS
T10224
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msuf Microbacterium sufflavum
Pathway
msuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KV394_15190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msuf03019
]
KV394_15190
03009 Ribosome biogenesis [BR:
msuf03009
]
KV394_15190
Enzymes [BR:
msuf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KV394_15190
Messenger RNA biogenesis [BR:
msuf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KV394_15190
Ribosome biogenesis [BR:
msuf03009
]
Prokaryotic type
rRNA processing factors
KV394_15190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Rootletin
Motif
Other DBs
NCBI-ProteinID:
UPL12936
UniProt:
A0ABY4ILV3
LinkDB
All DBs
Position
complement(3126076..3128163)
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AA seq
695 aa
AA seq
DB search
MTAVSLGLLPEVFVSQVSTQLHFYAPEVVPLPARPGRDERPAERDQEESSSGRRGRRRRG
GSDGDEQRDEPRQRQRVVEYITEPKAIKGSTRLEAKKQRRRDGRDAGRRRPVVTEAEFLA
RRESVDRKMVVRSKNGRTQIGVLEDGVLVEHYVARNQDASLIGNVYLGRVQNVLPSMEAA
FVDIGRGRNAVLYSGEVDWDGVETGNQPRRIELALKPGDRVLVQVTKDPVGHKGARLTSQ
ISLPGRYLVYVPGGSMNGISRKLPDNERARLKRILKEVLPESSGVIVRTAAEGATEEQLT
RDVQRLTSQWEHIQKQVESQQAPALLHAEPDLLVKIVRDVFNEDFTKMLIQGEDAQRTIR
AYLESVAPDLLERVESYEDEVDPFDAFRITEQIEKALDRKVWLPSGGSLVIDRTEAMTVV
DVNTGKFVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLR
RLIECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSEACEVCAGRGVIVHHDPVVK
HRANGGNGGGGGNGGRRQRGNGNGNGNGNGNTAPVVAAVTHSITEGAKSALAQIAASTIA
PSGDAPAESAPAEQAAAPAAERPKKARKKRGADRKGPKSPAEELLDSVLDALPEPKAPGQ
GRGRRRVTTAALSGTPVSVAAESSAQPVAAADPEA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
ctgaccgccgtctccctgggcctgctgcccgaggtgttcgtgtcgcaggtgtcgacccag
ctgcacttctacgcgcccgaggtcgtcccgctgccggcacgccccggtcgcgacgagcgt
cctgccgagcgcgaccaggaggagtcgtcctccggccgccgtggccgccgccgccgcgga
ggttccgacggcgacgagcagcgcgacgagccgcgtcagcgccagcgcgtcgtggagtac
atcaccgagccgaaggccatcaagggctcgacgcgcctggaggccaagaagcagcgccgc
cgtgacgggcgcgacgcgggtcgccgtcgtccggtcgtcaccgaggcggagttcctcgcg
cgccgcgagtcggtcgaccgcaagatggtcgtgcgctccaagaacggtcgcacgcagatc
ggcgtgctggaggacggcgtgctcgtggagcactacgtcgcccgcaaccaggacgcgtcg
ctcatcggcaacgtctacctcggccgtgtgcagaacgtgctccccagcatggaggccgcg
ttcgtcgacatcggccgtggtcgcaacgccgtgctgtactccggcgaggtggactgggac
ggcgtcgagaccggcaaccagccgcgccgtatcgagctggccctcaagcccggcgaccgc
gtgctcgtccaggtcacgaaggacccggtcggccacaagggcgcccgcctcacgagccag
atctcgctgcccggccgctacctggtgtacgtgcccggcgggtcgatgaacggcatcagc
cgcaagctgcccgacaacgagcgggcccgactcaagcgcatcctcaaggaggtgctgccc
gagtcctccggcgtgatcgtccgcacggccgcggagggtgcgaccgaggagcagctgacg
cgcgacgtccagcggctcacgtcgcaatgggagcacatccagaagcaggtggagagccag
caggcacccgcgctgctgcacgccgagccggatctgctggtcaagatcgtccgcgacgtc
ttcaacgaggacttcacgaagatgctcatccagggcgaggacgcgcagcgcacgatccgc
gcctacctggagagcgtcgcgcccgacctgctcgagcgcgtcgagtcctacgaggacgag
gtcgaccccttcgacgcgttccggatcaccgagcagatcgagaaggcgctcgaccgcaag
gtgtggctgccgtccggtggctcgctcgtgatcgaccgcaccgaggcgatgacggtcgtc
gacgtcaacaccggcaagttcgtcggctcgggcggcaacctcgaggagaccgtcaccaag
aacaacctcgaggcggcggaggagatcgtccgtcagctgcggctgcgcgacatcggcggc
atcatcgtggtcgacttcatcgacatggtgctggagtccaaccgcgacctcgtgctgcgg
cgtctgatcgagtgcctgagccgcgaccgcacgaagcaccaggtggccgaggtcacgtcg
ctgggcctcgtgcagatgacccgcaagaagctgggcctcgggctgctggagaccttcagc
gaggcgtgcgaggtctgcgcgggtcgcggcgtcatcgtgcaccacgacccggtggtcaag
caccgcgccaacggcggcaacggcggaggcggaggaaacggcggtcgccgccagcgcggc
aacgggaacggcaacggcaacgggaacggcaacaccgctccggtcgtggccgcggtgacg
cacagcatcacggagggcgcgaagtcggcgctcgcccagatcgccgcgtcgaccatcgcc
ccctcgggcgacgcccccgccgagagcgcaccggccgagcaggccgccgcgcccgccgcc
gagcgtccgaagaaggcccgcaagaagcgcggggccgaccgcaagggcccgaagtcaccg
gccgaggagctcctcgactcggtgctggacgcgcttcccgagccgaaggcaccggggcag
gggcgtggtcgccgccgggtgaccacggccgcgctctccggcacgccggtgtcggtggcg
gcggagagctcagcgcagccggtcgcggccgcggacccggaggcctga
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