Methanoculleus submarinus: OH143_02475
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Entry
OH143_02475 CDS
T08553
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msum
Methanoculleus submarinus
Brite
KEGG Orthology (KO) [BR:
msum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msum03016
]
OH143_02475
Enzymes [BR:
msum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OH143_02475
Transfer RNA biogenesis [BR:
msum03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OH143_02475
Prokaryotic type
tRNA splicing ligases
OH143_02475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UYU19695
UniProt:
A0AAX3EC21
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All DBs
Position
complement(514446..515816)
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AA seq
456 aa
AA seq
DB search
MRVPGRFFLSGTLAETLEEGAVRQLANVATLPGIVKHSLAMPDIHWGYGFPIGGVAAFDM
TEGVISPGGVGFDINCGVRLITTPLTEADLARRKRELIERLFDAVPTGVGAKSSLRVSNK
DLSAVMVDGARWAVERGLGTEADLVRCEGEGAMPGADPDAVSAKARQRGVPQIGTLGAGN
HFLEVQVAREIVDPEAAKAFGIAEGQVCFMVHCGSRGLGHQVATDHLRTLEGALPKYGIR
LPDRQLACAPIDSPEGRAYYGGMVSAANYAWTNRQVIMHEARKVFVDLFGIDYDEMRLVY
DVAHNVAKFERHDVDGVSTEVCVHRKGATRAFGPGAEGVPREYAGIGQPVIIPGSMGTSS
YLLHGTSTAMEKTWGSTCHGAGRVLSRSKAKKEVRGKELRERLAGEGILVRAHSDNALAE
EAPAVYKPSREVVRVVHEAGLSDIVARLEPLGVIKG
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgccggggcgctttttcctctccgggacactggcggagacgctcgaagaagga
gccgtccgccagctcgcgaacgtcgcgacgctcccggggatcgtgaaacactcgcttgcc
atgcccgatatccactggggatacgggtttcccatcggcggcgtcgccgcgttcgacatg
accgaaggggtcatctctcccggcggggtcgggttcgacatcaactgtggcgtccggctg
atcacgacgcccctgaccgaggccgatctcgcccgccggaaacgggaactgatcgagcgg
ctcttcgacgccgttccgaccggtgtgggtgcgaagagttccctgcgggtctcgaacaag
gatctctccgcggtcatggtcgacggcgcccggtgggcggtcgagcgcgggctcggcacc
gaagccgacctcgtccggtgcgagggcgagggggcgatgccgggcgccgaccccgacgcg
gtcagcgccaaagcgcggcagcggggcgtgccgcagatcgggacgctcggcgccggaaac
cacttcctggaggtccaggtggcgagggagatcgtcgaccccgaagcggcaaaggccttc
gggatcgccgaagggcaggtctgcttcatggtccactgcggctcacgcggcctcggccac
caggtcgcgaccgatcatttgcggacgctcgagggcgcgcttccgaagtacgggatacgc
ctccccgaccggcagctcgcctgcgctccgatcgactctccggaaggccgtgcctactac
ggtggcatggtctcggccgcgaactacgcttggacgaaccggcaggtcatcatgcacgaa
gcgaggaaggtcttcgtggacctcttcgggatcgattacgacgagatgcggctcgtctac
gacgtcgcgcataacgtcgccaagttcgagcgccacgacgtcgacggggtctcgacggag
gtctgcgtccaccgcaaaggagcgacgcgagcgttcggcccgggagcggagggcgtcccc
cgggagtatgccgggatcgggcagccggtgatcatccccgggagcatggggacgtcgtcc
tacctcctccacggcacgtcgaccgcgatggagaagacgtgggggagcacctgccacggg
gcggggagggtgctcagccggtcgaaggcgaagaaagaggtccgcgggaaggaactccgg
gaacgcctcgcgggagagggtatcctggtgcgtgcccacagtgacaacgccctcgcggag
gaggctccggcagtctacaagccgagccgggaagtggtgcgtgtggtgcacgaagcgggc
ctctcggatatcgtcgcccggctggagccgctcggggtgatcaaggggtga
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