Methanoculleus submarinus: OH143_03025
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Entry
OH143_03025 CDS
T08553
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msum
Methanoculleus submarinus
Pathway
msum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OH143_03025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msum03019
]
OH143_03025
03009 Ribosome biogenesis [BR:
msum03009
]
OH143_03025
Enzymes [BR:
msum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OH143_03025
Messenger RNA biogenesis [BR:
msum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OH143_03025
Ribosome biogenesis [BR:
msum03009
]
Prokaryotic type
rRNA helicases
OH143_03025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_30
Hyccin
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
UYU19080
UniProt:
A0AAX3EAC0
LinkDB
All DBs
Position
612985..614568
Genome browser
AA seq
527 aa
AA seq
DB search
MEKNITFQELNISPKTLRAIEDMGFEEPTPIQVSTIPAILDGRDVTGQAQTGTGKTAAFG
VPAIERVDTGSRETQVLVLSPTRELAIQTAEEFSRLAKHHQGINILPIYGGQPIDRQFRA
LQRGVQIVVGTPGRVLDHLDRGTLSFGAVKVVVLDEADQMLDMGFREDIEKILDDTPRDR
QTILFSATLPKPILEISKKFQKNPEFISVARKEVTVPQIEQLYLEVRSRDRLEILTRLLD
MYDPDLTLIFSNTKRGVDDLTTHLQARGYFAEGLHGDMKQTLRDRVMAKFRAGSIDILVA
TDVAARGIDVEDVDLVINYDVPQDIEYYIHRIGRTARAGRTGRAVTFVGPKEYFKLRTIQ
NYTKIKIARIPLPTQGDVEESRTRKLIDRVHQTIDEGNLDQYANLVERIIAEDYTSLEVA
AALLKLELGGVGQGQPQDIRPAQGQALLRIPVGREHQIRPKDIVGALAGETGIPGSAIGA
INIYDTYSTVDVPLDAAERVIEGMKGKTIARVRLTRPIEIVEAAGGR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaatattaccttccaggaactcaatatctcgccaaagacactccgcgcaata
gaagatatgggatttgaagagcccacgcccatccaggtcagcaccataccggcgatactc
gacggacgcgacgtgaccggccaggcacagacaggaacagggaagacagcggcgttcggc
gtcccggcgatcgagcgcgtcgacaccggcagccgggagacgcaggtgctcgtcctctcc
cccacccgggaactcgccatccagactgctgaagagttttcccgtctggcgaaacaccac
cagggcatcaacatcctcccgatctacggcggccagccgatcgaccggcagttccgggcg
ctgcaacgcggcgtccagatcgtcgtcgggacgcccggccgggtgctcgaccacctcgac
cgggggacgctctcgtttggcgcggtgaaggtcgtcgtcctcgatgaggccgaccagatg
ctggatatgggattccgggaagacatcgaaaagatcctcgacgataccccgcgggaccgc
cagacgattctcttctcggcaaccctcccaaaacccatcctcgagatctcgaaaaagttc
cagaaaaaccccgagttcatctcggtcgcgcgcaaggaagtgaccgtcccgcagatcgag
cagctctacctcgaggtgcgcagcagggacaggctcgagatcctcacccggctgctcgac
atgtacgatcccgacctgaccctgatcttctcgaacaccaagaggggtgtcgacgacctg
accactcaccttcaggcccgcggctacttcgccgaagggcttcacggggacatgaagcag
accctgcgcgaccgggtgatggcgaaattccgggcggggtcgatcgatatcctggttgcg
acggacgtcgccgcacggggcatcgatgtcgaggacgtcgacctggtcatcaattacgac
gtcccgcaggatatcgagtactacatccaccgtatcggcaggacggcacgagccgggcgc
accgggcgggccgtcacgttcgtgggccccaaggagtatttcaagctccggacgatccag
aactatacaaaaattaagatcgcccggatcccgctcccgacccagggagacgtcgaggag
agccggacgcgcaaactcatcgaccgggtacaccagaccatcgacgagggcaatcttgac
cagtacgcgaacctcgtcgagcggatcatcgccgaggattatacctcgctcgaggtcgcc
gccgccctcctgaaactggaactcggcggggtcggccagggccagccgcaggatatcagg
cctgcccaggggcaggctcttctcaggatcccggtcggaagagagcaccagatcaggccg
aaggatatcgtcggagcgctcgcgggcgagaccgggattcccggcagcgccatcggcgcg
atcaacatctacgacacctactccaccgtcgacgtgccccttgacgccgccgagcgggtc
atcgaggggatgaaaggaaaaaccatcgcacgggtccggctgacccggccgatcgagatc
gtcgaggcggccggcgggcggtaa
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