Mesobacillus subterraneus: LC048_09190
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Entry
LC048_09190 CDS
T09285
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msut
Mesobacillus subterraneus
Pathway
msut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC048_09190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msut03019
]
LC048_09190
03009 Ribosome biogenesis [BR:
msut03009
]
LC048_09190
Enzymes [BR:
msut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LC048_09190
Messenger RNA biogenesis [BR:
msut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC048_09190
Ribosome biogenesis [BR:
msut03009
]
Prokaryotic type
rRNA helicases
LC048_09190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RNA_pol_Rpb1_1
UvrD-helicase
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WLR57021
LinkDB
All DBs
Position
1786445..1788019
Genome browser
AA seq
524 aa
AA seq
DB search
MNQFRSLGISELLAETLNQHGISKPTSIQEKAIPLLLDGKDVIAQSQTGTGKTFAFVLPI
LEKIDIEKSNIQALIVTPTRELALQITNEITKLIEGMEGINVLAVYGGQDVESQLKKLKK
NIHIVIGTPGRLLDHIRRGTVDFSNAATLVLDEADQMLHIGFLNEVEEIIKQTPKTRQTL
LFSATMPDEIKRLAKQHMYKPEYIQVEKTQAPLENIKQIAISTTDRAKQNDLIQSLGLYQ
PFLGVIFCRTKRRVSKLNDALKANHFNCDELHGDLSQAKREQVMKKFRDAKIQYLIATDV
AARGLDVEGVTHVFNYDIPLDTESYIHRIGRTGRAGSEGLALTFYSPKDRPLLDQIETEL
KIRIEKKNMGNAKKGESETDEYNSGNKSKQRSGDYKGKNTRSRRRDDRKPERDHRGEKIG
KEPASRSRAEDRREARYEGPGRRDREQPSPRRERRSYPEGQQISSSRSGGRRMEKPSSRG
SEERPRRNTGEKPNQDTLGRERRNYSSPGGRTQKRSGSSNRRSR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcaatttagatctttaggtatatcagaactacttgcagaaacgcttaaccagcat
ggaatttcgaaacctacatcaatacaggaaaaagcaataccattattgcttgatggcaag
gatgttattgcacagtcgcagacgggtacagggaaaacctttgctttcgtgctgcctatc
ctggagaaaatcgatatcgaaaaatcaaatatacaggcattgattgtaacacctacaaga
gagcttgcattacagataacgaatgaaattaccaaactcattgaaggaatggaaggaata
aatgttcttgctgtctatggaggtcaggatgttgaatcacagctgaaaaaactaaagaaa
aacatccatatagttattggtactcctggaagattgcttgaccatatccgcagggggact
gttgatttttccaatgcagctactcttgtacttgatgaagcagatcaaatgcttcatatc
ggtttcttgaatgaggttgaagaaatcattaaacaaacacctaaaacaaggcaaacctta
ctcttttcagcgacaatgcctgatgaaattaaaaggctagccaaacaacacatgtataaa
ccagaatatatccaggtcgagaaaacacaggccccattagaaaacatcaaacaaattgcc
ataagtacaaccgacagggccaaacaaaatgatttaattcaatcacttggattgtatcag
ccgtttttaggagtgattttctgcaggacaaaaagaagggttagcaagttgaatgacgct
ttgaaagcgaaccattttaactgtgacgaactgcatggagacctttctcaggcgaaaagg
gaacaggtgatgaaaaagttccgtgacgcaaagatccagtatttgatcgctaccgatgtc
gcggcaaggggtctggacgttgaaggtgtcacacacgttttcaattatgatatccctttg
gatacagaaagctacatccatcgaattggccgtacgggcagggcaggcagtgaagggctt
gctttaactttttattcgccaaaagatagaccattattggatcagattgaaacagagcta
aaaattagaatcgaaaagaaaaacatggggaacgccaaaaaaggcgaatctgaaacagat
gaatataactcaggcaataaaagcaaacaaagatcaggtgattacaagggaaagaatacc
agatcgagaagacgagatgataggaaaccggaaagagaccatcgtggcgaaaaaatagga
aaagaacccgcttcccggagcagggctgaagatagacgtgaagccaggtacgaggggcca
ggacgaagagatagggaacaaccgtctccaaggcgtgagcggagaagctatcctgaaggg
cagcaaataagttcctctcgttcaggtggaagaagaatggaaaaaccttcaagccgtggt
agtgaagaaagaccaagaagaaatactggagaaaaaccaaatcaggatacgctaggcaga
gagagaaggaactatagctcacctggaggcagaacccaaaaaaggagcggttcaagcaat
cgcaggagcaggtaa
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