Mesobacillus subterraneus: LC048_12495
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Entry
LC048_12495 CDS
T09285
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
msut
Mesobacillus subterraneus
Pathway
msut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC048_12495 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msut03019
]
LC048_12495 (rny)
Messenger RNA biogenesis [BR:
msut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LC048_12495 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
WLR57688
LinkDB
All DBs
Position
complement(2402032..2403594)
Genome browser
AA seq
520 aa
AA seq
DB search
MDLIISIISILLGLFVGAVVGYFYRKSVAEAKIAGAKNAAEQIVEDAKREAEAMKKESLL
EAKDENHKLRTEAEREIRERRNELQKQENRLLQKEENLDRKDESLNKRENLLEKKDDALS
KRQQHIEEMESKVDEMVRNQQTELERISGLTRDEAKSIILERTEQELAHDIALMIKENEN
RAKEESDKKAKEVLSLAIQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRRETARLALDKLVQDGRIHPARIEEMVEKARREVDEHIR
EVGEQTTFEVGVHGLHPDLIKILGRLKYRTSYGQNVLKHSMEVAQLSGLLAAELGEDETL
ARRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDTEPTSIIAVLV
AAADALSAARPGARSEALENYIRRLERLEEISESYEGVEKSFAIQAGREIRIMVKPDQID
DLQAHRLARDIRKKIEEELDYPGHIKVTVIRETRAVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggatctaattatttcaatcatctccattttgcttggcctattcgtcggtgcagttgtt
ggctatttttatcgtaaatccgttgcggaagcaaaaattgcaggtgccaaaaacgccgca
gaacaaattgttgaagatgcgaagcgtgaagcagaggctatgaagaaagaatccctgctg
gaggctaaggatgaaaatcacaaactgcgtacagaagcagagcgtgaaattcgtgaacga
agaaatgaactgcaaaaacaagaaaatcgtttattgcaaaaagaggagaatcttgatcgc
aaagatgagtcgttgaacaaacgtgaaaatcttttagagaaaaaagatgacgctctttcc
aaaagacaacagcatattgaagagatggaaagcaaagtggacgagatggtacgaaatcag
cagactgaactagaacgcatctcgggcttaacgcgtgatgaggctaaatccatcattttg
gagcgaactgagcaagaacttgctcacgacattgcactaatgattaaggaaaacgaaaac
agggcgaaagaagaatccgacaagaaagccaaggaagtactttcactggccattcaaaga
tgtgcagcagatcatgttgctgaaacgactgtatcagttgtaaatcttccgaatgatgaa
atgaaagggcgtattatcggacgtgagggacggaatatccgcaccctggaaacgttgacg
ggaatcgatctcattattgatgacactccggaagcggttatcctttctggatttgaccca
atcagacgtgaaacagcccgtctagctctagacaagcttgtccaggatggacgtattcat
ccggctcgaattgaggaaatggttgagaaagcacgccgtgaagtagatgaacacattcgt
gaggttggggaacagactaccttcgaagtgggagtgcacggactgcatccagatcttatt
aaaattcttggccgcttgaaatatcgtacaagttacggacagaatgtacttaagcattca
atggaagtagcacagttgtccggattgcttgccgcagagttaggtgaagatgagacatta
gcacgtcgcgcaggactcctgcatgacatcggaaaggcgattgaccatgaggtagaagga
agccacgttgaaattggcgtggagctggctactaagtataaggaacatcctgttgttatc
aacagtattgcttcccaccatggtgatactgagccaacttcgattattgcagtacttgtt
gctgctgctgatgcattgtcagctgctaggcctggtgcccgcagcgaagctcttgaaaac
tatatccgccgtcttgaaaggctggaagagatttctgaatcctatgaaggagtcgaaaaa
tcattcgcaattcaagcgggcagagaaatccggatcatggttaagcctgatcaaattgat
gacttgcaggcacaccgcctcgcacgtgatattcgcaagaagatcgaggaagagctcgat
tatccaggacatatcaaagttacagtcatccgtgagacacgggcagttgaatatgcaaaa
taa
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