Mesobacillus subterraneus: LC048_21165
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Entry
LC048_21165 CDS
T09285
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
msut
Mesobacillus subterraneus
Brite
KEGG Orthology (KO) [BR:
msut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msut03009
]
LC048_21165 (rlmD)
Enzymes [BR:
msut01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LC048_21165 (rlmD)
Ribosome biogenesis [BR:
msut03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LC048_21165 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
PrmA
MTS
Methyltransf_15
Methyltransf_11
RrnaAD
Methyltransf_4
TPMT
PCMT
N6_N4_Mtase
Methyltransf_12
Methyltransf_32
N6_Mtase
Ubie_methyltran
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
WLR57774
LinkDB
All DBs
Position
complement(4051268..4052638)
Genome browser
AA seq
456 aa
AA seq
DB search
MSKTIPVKKNDFIDVVFEDLTHDGAGVAKVDGYPIFVQGGLPGEKAKIKVTKVNKGYGFG
RLMEILERSTFRVECPADDAHKYGGCQLQHINYEGQLKYKENQVKQVLTRIGKLEDVVVH
PILGMDNPWHYRNKAQVPVGEKDGKLIAGFFKPRSHEIVDTNESLLHLDEINEAVQAVKE
TSSELGIQPYNEEKHKGVLRHIIARYGRQTGELMVVIVTRTNEIPQRNKLVEEIIARLPK
VKSIVHNVNSKKTNVIMGDKTEVLWGSEVIYDYIGDIKFAISARSFYQVNPEQTKVLYDK
ALEYAELSGEESVIDAYCGIGTISLFLAQKAKKVLGVEIVPEAIEDAKRNAELNGITNAE
FAVGEAETVIPAWYKEGNTADVLVVDPPRKGCDEALLQTIIDMKPKKVVYVSCNPATLAR
DLRILEDGGYKTVEVQPVDMFPQTTHIEAVVKLSLI
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaatcccggttaaaaagaacgattttatagatgtagtatttgaggatttg
acgcatgacggagcgggtgtagccaaggttgacggctatccgatttttgtccagggcgga
cttcctggcgaaaaggcaaaaattaaagtaaccaaggtgaacaagggatacggctttgga
cgcttgatggagatacttgaaagaagcaccttccgtgttgagtgtcctgctgatgatgcc
cataaatacggcggctgccagctgcagcatatcaattacgagggccagctgaagtataag
gaaaaccaggtaaagcaagttctgacgcgaatcggcaagcttgaggatgttgtggtacac
ccgattttgggaatggacaacccgtggcattatcggaacaaagcccaggtgcctgttgga
gagaaggatggcaagctgattgcaggcttcttcaagccgcggagccatgaaatcgtcgat
acgaatgagagtttgctgcatctcgatgaaatcaacgaagccgtacaggcggtgaaagag
acctccagtgaacttggcattcagccatataatgaggaaaaacacaaaggcgtgctgcgc
cacatcatagcccgttacgggagacaaaccggtgagctgatggttgttattgtgaccagg
acgaatgagattcctcaacgaaacaaactggtcgaggaaatcattgcaaggcttcctaag
gtaaaatcgattgtgcataacgtgaactcgaagaaaacgaatgtcatcatgggagacaaa
acggaggtcctctggggcagcgaggtcatctacgactatatcggtgacatcaagttcgca
atctcagcccgttcattttaccaggtgaatcctgaacagacaaaagtgctctacgacaaa
gcactggagtatgcagagctttcaggcgaagaatccgtcatagatgcctattgcggcatt
ggaaccatctcgttatttttagcgcaaaaagcaaaaaaggtactcggcgtcgaaatcgtc
cccgaagccatcgaagacgcaaaacgaaacgccgaactgaacggcatcaccaacgcagaa
tttgcagtcggtgaagccgaaaccgtcattccggcatggtacaaagaagggaacacagca
gacgttttggttgtcgacccaccaagaaaaggctgcgatgaagcactcctgcagactatt
attgatatgaagccaaagaaggttgtttatgtgtcatgtaacccggccaccctcgcgagg
gatttgcgaatccttgaagatggcgggtacaagacagttgaagtacagccagtggatatg
tttccgcagacgacacatattgaagcggtagtgaaactatccttgatttaa
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