Mesobacillus subterraneus: LC048_21845
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Entry
LC048_21845 CDS
T09285
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msut
Mesobacillus subterraneus
Pathway
msut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC048_21845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msut03019
]
LC048_21845
03009 Ribosome biogenesis [BR:
msut03009
]
LC048_21845
Enzymes [BR:
msut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LC048_21845
Messenger RNA biogenesis [BR:
msut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC048_21845
Ribosome biogenesis [BR:
msut03009
]
Prokaryotic type
rRNA helicases
LC048_21845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
CMS1
NAT10_TcmA_helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WLR54966
LinkDB
All DBs
Position
complement(4190882..4192369)
Genome browser
AA seq
495 aa
AA seq
DB search
MTMFQDMGISPATLKAVKNMGFEEATPIQAETIPISLLNKDVIGQAQTGTGKTAAFGIPL
VEKIKKENHNIQGIIIAPTRELAIQVSEELYKIGAGKRVGVLAIYGGQDINRQIRALKKG
PHIIVGTPGRLLDHINRKTIRLDSVETVILDEADEMLNMGFIEDIESILAKIPSERQTLL
FSATMPGPIRKIAERFMKDPEVVRVKAKEMTVPLIEQYYVEVQEKNKFDVLTRLLDIQSP
ELVIIFGRTKRRVDELAEALNLRGYTAEGIHGDLTQAKRMSVLRKFKEGSIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMAITFVTHRETSYLHVVEKTTK
RRMEKMTAPTLDQALEGQQRAVVDKITQTIESNNLQYYRQAADELLKNHDAQTVVASVLK
MLTKEPDTTPVKLTEEKPLPNRRDKKPQGDRRRYDNRGSDGRNKKPYKPRSGTKRTGGGG
GGSREGGSYKSRSSR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgacaatgttccaagacatgggcattagccccgcaacattaaaagctgtaaagaatatg
ggttttgaggaagcaactccaattcaggcagagacgattccaatcagccttctgaacaaa
gacgtgattggccaggcgcagacaggtaccggtaagactgctgctttcggtattcctcta
gtggaaaaaatcaagaaagaaaaccataacatccagggaatcatcattgcgccaactcgt
gaattggcaatccaggtttctgaggaattatataaaatcggtgctggcaagagagtaggc
gtccttgcgatttatggtggccaggatatcaaccgccagatccgcgcattgaaaaaaggg
cctcacatcatcgtcggaacgccaggacgactgcttgaccacattaacagaaagacaatc
cgtcttgatagtgtcgaaactgtaatccttgacgaagcagatgaaatgctgaacatgggc
ttcatcgaagatatcgaatcaatccttgcaaaaatccctagcgaacgccagacattattg
ttctcggcaacaatgccaggaccaatccgcaagattgctgagcgcttcatgaaggatccg
gaagtcgttcgggtcaaagcgaaggaaatgacagttcctttgatcgagcaatactatgta
gaagtacaggaaaagaacaagttcgatgttcttacacgacttcttgacatccaatctccg
gaattggtcatcatctttggacgcacgaagcgccgtgttgatgagcttgctgaagcattg
aacctgcgcggctacactgcagaaggtatccacggtgaccttacgcaggcgaaacgtatg
tcagtccttagaaaattcaaggaaggttcaatcgacgtgctagttgcgacagacgtggca
gctcgtggacttgacatttccggtgtaactcacgtttacaacttcgatatcccacaagac
cctgaaagctatgtacaccgtatcggacgtactggccgtgcaggtaaagagggtatggcg
atcacgtttgttacacacagagagacttcataccttcatgtagtggaaaaaacaacgaaa
cgccgcatggagaaaatgactgctccaacattggatcaagctcttgaaggccagcaaaga
gcagttgttgacaagattacacaaacaatcgagtcaaataatcttcaatactaccgtcag
gcagcagatgagctattgaaaaaccatgatgctcaaacagtcgttgcgtcagtattgaaa
atgctgactaaagagcctgatacaactcctgttaagcttactgaggaaaagcctcttcca
aacagaagagacaagaaacctcaaggagaccgcagaagatacgataacagaggcagcgat
ggacgcaataaaaagccttacaagccacgttctggaacgaaacgcacaggcggcggcggt
ggcggcagcagagaaggcggcagctacaaatcaagatcatcacgctaa
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