Microbacterium suwonense: GCM10025863_03820
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Entry
GCM10025863_03820 CDS
T09270
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msuw
Microbacterium suwonense
Pathway
msuw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msuw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCM10025863_03820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msuw03400
]
GCM10025863_03820
Enzymes [BR:
msuw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCM10025863_03820
DNA repair and recombination proteins [BR:
msuw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GCM10025863_03820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
LigD_N
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BDZ37768
LinkDB
All DBs
Position
complement(367933..369276)
Genome browser
AA seq
447 aa
AA seq
DB search
MTEPHPLEYLTFEGEIPQGEYGAGSMTVWDIGTVMLEKWRDDEVIGTFTGRAGGRLGSAR
LALIRTEGEGEKSQWLLHRMPDAGAPRTKQHTRQRTNPHLSQRTSQPALQDAPEHAHEAA
RERGDAARIRPMLAETGTPGLARALSTPSWAEVKWDGIRAIGTWADDRLTLRARSGTDIT
GRYPELTSPSSLSLPASDAVVDGEIVAFDAQGRPSFSRLQDRMHLTRAREIEREAARTPV
RYVLFDLMRLDGHDLSRLPLRQRRELLEQLTADVTAPVQVPPVFDDLDAALAVSARYGLE
GVVAKDPESGYRPGARSSSWLKLKHTRTQEAVIVGIRPGRGNRSGTIGSLLLAVPDQDGS
LRYVGRVGTGFTDRMLRDLAARLEPLRASSPGLAGVPSADASDAQWVRPELVGEVEFANW
SPGGILRHARWRGLRPDKDPREVRQET
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagccgcacccactggagtacctcacattcgagggcgagatcccccagggtgag
tacggcgcagggtcgatgaccgtctgggacatcggcacggtgatgctggagaaatggcgc
gacgacgaggtgatcggcaccttcaccggaagagcgggcggccggctcggctcggcgcgg
ctcgccctgatccgcaccgaaggcgagggcgagaagtcgcagtggctgctgcatcggatg
ccggatgccggtgcaccgcgcacgaaacagcacacgagacagcgcacgaacccgcacctg
tcacagcgcacgtcacagccggcactgcaggatgctcctgagcacgcgcacgaagcagca
cgcgagaggggcgacgctgcccgcatccgtccgatgctcgccgagaccggcacgccgggc
ctggcccgggcgctcagcacgccgtcctgggccgaggtgaaatgggacggcatccgcgcc
atcggcacctgggccgacgaccgcctcacgctgcgagcacgcagcggcaccgacatcacc
gggcgatacccggaactgacctccccgagctcgctgagcctgccggcatccgatgccgtc
gtcgacggcgagatcgtcgccttcgacgcgcaggggcgacccagtttcagccgactgcag
gaccggatgcacctcacccgcgcccgcgagatcgagcgcgaggccgcgcgaacaccggtg
aggtacgtgctgttcgacctgatgcggctggacgggcacgatctcagccggctgccgctg
cggcagcgccgggagctgctggagcagctcaccgccgatgtgaccgctcccgtgcaggtt
ccgcccgtcttcgacgatctcgacgcggcactggctgtgagtgcgcggtacgggctggag
ggggtcgtcgcgaaggacccggagtccggttaccgtcccggagcacgatcgtcgtcgtgg
ctgaaactcaagcacacccgcacgcaggaggcggtgatcgtcggcatccgtcccggccgc
ggcaaccgcagcggcacgatcggctcgctgctgctcgccgtgcccgaccaggacggctcc
ctgcggtacgtgggccgcgtcggcaccgggttcaccgaccggatgctgcgcgacctcgcc
gcccgactggagccgctgcgcgcatcgtcgccggggctcgcaggggtgccgtccgccgat
gcctcggacgcgcaatgggtgcgtcccgagctggtcggggaggtggagttcgcgaactgg
tcgccgggcggcatcctgcgtcacgcacgctggcgcggactgcggcccgacaaggatccc
cgcgaggtccggcaggagacctga
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