Microbacterium suwonense: GCM10025863_22580
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Entry
GCM10025863_22580 CDS
T09270
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
msuw
Microbacterium suwonense
Pathway
msuw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msuw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10025863_22580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msuw03019
]
GCM10025863_22580
03400 DNA repair and recombination proteins [BR:
msuw03400
]
GCM10025863_22580
Enzymes [BR:
msuw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM10025863_22580
Messenger RNA biogenesis [BR:
msuw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCM10025863_22580
DNA repair and recombination proteins [BR:
msuw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GCM10025863_22580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
BDZ39644
LinkDB
All DBs
Position
complement(2172540..2175218)
Genome browser
AA seq
892 aa
AA seq
DB search
MPSDPYEDVPYPDEPWSEEPPGELDWIPPEDGYEPALDWGAAPEASASVPASRPASARPA
PSRYPTAIEALRTVFGYDAFRGDQAAIIEHVIGGGDAVVLMPTGGGKSVTYQVPALVREG
TGLVISPLIALMHDQVDALRANGVRAAYLNSTQAPDERREVERAYLAGELDLIYVAPERL
SSAQTTQLLQRGSLSVIAIDEAHCVSQWGHDFRPDYLALGDLAERFPGVPRMALTATATR
ATHQELTERLNLDRAEHFVASFDRPNIQYRIVPKVDPRGQLVAFIRAQPEGAAGIVYALS
RKSVEQTATYLAAQGLDALPYHAGLPAEVRAANQSRFLREDGVVMVATIAFGMGIDKPDV
RFVAHIDLPKSVEGYYQETGRAGRDGEPAVAWMAYGLGDVVQQRRLIDQSPGDRTFKMRM
GQHLDAMLALCETVACRRQNLLRYFGQDSGTCGNCDTCLEAPETFDGLVPAQKLLSTIVR
LKRERNQAFGAGHLIDILRGASTDRIRKMGHEQIATYGIGSDLSDQDWRSVVRQLLARGI
LVAQGEYGTLAPGDAAGECCAARRRCRCARTRSGGSAHPAHGRPPPPTASQTAIASCSRH
CGPGAPRPRVRSASRRTSFSATPRCAHWPSIARHPSPHSAASAASVRRSARPTAPPCSRS
SPPTDAAPRSAARRPPQRCGCFSLVRGSFHQRFPSARQGDGWILRVRPVSRRRFPSARQF
SASAATNDGADAENCSGCCPGATAAATARPNQPAYSSACTCTVAAPPMSLDTGQRECAAV
TSSEVSASDRPSAERCASTWNSYPGPGSDACSSTSTRTAVRRSRRTIACAVAFRQVTQAS
ASSCSGFDAAASKSAPSGEETGTSMPPITRLVPSPPVVLIASVRYLALIPQL
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgccatccgacccgtacgaggacgtgccgtacccggatgagccgtggtccgaggagccg
cccggggagctggactggatcccgccggaggacggctacgagcccgcactggactggggt
gcggcgccggaggcctcggcatccgttcccgcgtcgaggccggcgtccgcgcgacccgca
ccgtcgcgctacccgaccgcgatcgaggcgctgcggacggtgttcggctacgacgcgttc
cgcggcgatcaggcggcgatcatcgagcacgtcatcggcggcggggatgccgtggtgctg
atgcccaccggcggcggaaagtcggtcacgtatcaggtgcccgcgctcgtgcgcgagggc
accgggctcgtcatcagcccgctgatcgcgctcatgcacgaccaggtcgacgcgctgcgc
gcgaacggcgtgcgcgcggcctacctcaactccacgcaggcgcccgatgagcgccgcgag
gtggagcgggcgtatctcgccggcgagctggacctcatctatgtggcgcccgagcgactc
tcctcggcgcagacgacgcagctgctgcagcgcggcagcctcagcgtgatcgcgatcgac
gaagcgcactgcgtgtcgcagtggggtcacgacttccgtcccgactacctggcgctgggc
gatctggccgagcggttcccgggcgttccgcgcatggcgctcaccgcgacggccacccgc
gccacgcatcaggagctcaccgagcggctgaacctcgatcgtgccgagcacttcgtcgcc
agcttcgaccggcccaacatccagtaccgcatcgtgccgaaggtcgatccgcgcgggcag
ctggtggcgttcatccgcgctcagcccgagggggcagcagggatcgtctacgcgctgagc
cgcaagtcggtggagcagaccgcgacgtatctcgcggcgcaggggctggatgcgctgccg
taccatgcgggtctgccggccgaggtgcgcgcggcgaaccagtcgcggttcctgcgcgag
gacggtgtcgtgatggtcgcgaccatcgcgttcggcatgggcatcgacaagcccgacgtg
cgtttcgtcgcgcacatcgatctgcccaaatcggtggagggctattaccaggagaccggg
cgcgccggccgcgacggcgaaccggccgtggcatggatggcgtacggtctgggcgatgtc
gtgcagcagcgccgcctgatcgaccagagccccggcgatcgcacgttcaagatgcgcatg
gggcagcacctggatgccatgctcgcgctgtgcgagacggtggcctgccgccgccagaac
ctgctgcggtacttcgggcaggactcgggcacgtgcggcaactgcgacacctgcctggaa
gcgcctgagaccttcgacggcctggtgcccgcgcagaagctgctgtcgacgatcgtgcgc
ctcaagcgcgaacgcaatcaggccttcggtgccggtcacctcatcgacatcctgcgcggc
gcctccaccgatcgcatccgcaagatgggccacgagcagatcgccacgtacggcatcgga
tccgacctgtccgatcaggactggcgcagtgtggtgcggcagctgctggcccgtggcatc
ctcgtcgcgcagggcgagtacggcaccctcgctccgggcgatgccgccggggagtgctgc
gcggcgagacgccggtgccgctgcgcaaggacacgatcgggcgggtcagcgcatcccgcg
cacggaagacctccgccgccgacagcgtcgcagacggcgatcgcgagctgttcgaggcac
tgcgggcctggcgcgccgagaccgcgcgtgagatcggcaagccggcgtacatcgttttcg
gcgacgccacgctgcgcgcactggccgagcatcgcccggcatccgtcgccgcactcagcg
gcatcagcggcatcggtgagaagaagcgcgaggcctacggcgccgccgtgctcgaggtca
tcgccgcccactgacgccgcgccccgctccgccgcgcgccgcccgccgcagcgctgcgga
tgcttttcgctggttcggggttcatttcaccagcgttttccatccgcgcgccagggggac
ggatggatcttgcgggttcggcccgtttctcgccggcgttttccatccgcgcgccagttt
tcggcatccgctgcaacgaacgatggcgcggatgccgaaaactgcagcggatgctgcccc
ggggccaccgcggccgcaaccgcgcgaccgaatcagccggcgtactcctcggcgtgcaca
tgcacggtcgcggcgccaccgatgagcttggacaccgggcagcgggagtgcgcggcggtg
accagctcggaggtctcggcgagcgacaggccctcggccgagagatgcgcgtcgacatgg
aactcgtatcccgggccgggatcggatgcatgcagctcgacctcgacacgtaccgcggtg
cgccgttcgcgccgcacgatcgcctgcgcggtcgcgttcagacaggtgacccaggccagc
gccagcagctgctcggggttcgatgccgcagcgtcgaaatcggcgcccagcggtgaggag
accggaacctccatgcccccgatcacacgactcgtgccgtcgcctccggtggtgttgatc
gcttccgtccggtacctggcactcatacctcaactataa
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