Allomeiothermus silvanus: Mesil_1974
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Entry
Mesil_1974 CDS
T01246
Name
(GenBank) transcription factor CarD
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msv
Allomeiothermus silvanus
Pathway
msv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mesil_1974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msv03400
]
Mesil_1974
Enzymes [BR:
msv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mesil_1974
DNA repair and recombination proteins [BR:
msv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mesil_1974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
Cas3-like_C_2
AAA_16
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADH63849
UniProt:
D7BGZ6
LinkDB
All DBs
Position
1966047..1969013
Genome browser
AA seq
988 aa
AA seq
DB search
MALTKDQILNHYLPGLPQVARARLFAQTEPPAILLVPEHRLDFYRNLEPFGVGVYVNPGL
EAWGEAGWVVFDYREALQAFPQDPSAWRLVLEVGRRYLREDLLERLTRMGYLRESEEGEA
GFAVRGEIVEIGEVRLEFFGDELEAIKVAGEHKRRFVLGAKPGKAEAWDSHKIRHFPGPV
FLDMPSLAPGELWQHLEGRDLVTFGLGGPELPKLDLGYQALPPYRARIAQFVEEVRRWTE
QDYGVVLFYKHAKGRAYLESKLQGINLRKSGRFECKPGWITLVPGGFEGAYLDPEAKAVC
LTEPHLYAFGSGQAGPSRRIVTGETGDPSALAPGDYLIHPEHGIGQFVGLEPREILGVKR
DYLILQYAGEARLYLPVEQLPLLKRHPGTTDDPPRLSSLGKGEWKKAREKAQKDAEELAA
RMLVLHAKRQATPGRAWAPIPEWDSLIEKNFPYALTPDQEKSLEDTFRDLEAPRPMDRLI
SGDVGFGKTEVALRAAHRVVGHGAQVALLVPTTLLAEQHTQTFKSRFEGLPVRVEGLSRF
TSELDEQRILRDLEAGAVDIVIGTHRLLSGDLRFKDLGLLIIDEEHRFGVAQKERIREIA
ETVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKPIQTVLAPYDPSLVREAILSEM
ERGGKVFYVHDRVATIQARQRYLENIAPEARIGVVHGQMPEGDIEEVMLAFAEGAFDVLL
ATTIIESGLDIPEANTIVIERADRLGLAALYQLRGRVGRRDQEAYAYFFHPPRLTEAAER
RLSAIADLSDLGSGHLLAEKDMEIRGVGNLLGPEQHGHIRAVSLEIYTELLAEAIAKLKG
EKTEPEKHVTLDLAVSARLTPEYIPSAAARSRYYGRLAEAKRLAQVARIAGELRERYGEP
PVEVENFLALTRLRLLAEAKGVVSITEDLTWLQLVFERWPLDYDSKALRALPYRIELTQY
PPGFRIAKKGLSQEQYSQAVSDLLYLVD
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgaccaaagaccaaatcctcaaccattacctgccgggcctgccccaggtggct
cgagcccggctcttcgcccaaaccgagcctccggcaatcctgctcgttcctgagcaccgt
cttgacttttaccgcaacctcgagcccttcggcgtaggggtctacgtcaaccctggtctg
gaggcctggggggaggccgggtgggtggtgttcgattacagggaggcccttcaggctttc
cctcaagacccttcggcttggcggctggtgctcgaggtggggcggcgctacctgcgtgag
gacttgctggagcggctcacccgcatgggctatctgcgcgaatccgaggagggggaagcg
ggttttgcggtacgcggggagatcgtagagatcggtgaggtccgcctggagttttttggg
gatgaactcgaggccatcaaagtggccggggagcacaaacggcgctttgtcctgggagcc
aagccgggcaaggccgaagcatgggattcgcacaagattcgtcacttccctggcccggtc
ttcctcgacatgccctcgctggcgccgggcgaactatggcagcacctcgagggccgcgac
ctggtgaccttcgggttgggtgggccggagctgcctaagctcgaccttggctaccaggcc
ttgcctccttaccgagcgcgtattgcgcagtttgtggaggaggtgcggcgttggaccgag
caggactatggagtggttctgttttacaagcatgccaaaggccgcgcctacctcgagagc
aagctacaggggataaatctgcggaagtcgggtcggtttgaatgcaagcccggctggatt
actttggttcctggtgggtttgaaggggcctacctcgacccggaggcgaaagccgtttgc
ctcactgagccgcatctgtatgcgtttggttcagggcaagctggcccgagccgaaggatc
gtaacaggggagacgggtgacccttcggcgctggcgccgggggactacctgatccacccc
gaacacgggatcgggcagttcgtgggcctcgagcctcgcgagattcttggcgtaaagcgc
gattacctgatcctccagtacgcgggggaggcacgtttatacctcccagtagagcagcta
ccgctgctcaagcgccaccctggtactaccgatgatcctcctaggctttctagcttgggc
aagggggagtggaagaaagcccgggagaaagcccaaaaagacgccgaagagctagccgca
cggatgctggtactgcatgccaagcgtcaggctacgccggggcgggcctgggcgcctata
ccggagtgggattcgctcatagagaaaaactttccctacgcccttacgcctgatcaggag
aaatcgctggaggacacttttcgcgacctggaagctcctcgcccgatggatcgcctcatc
tccggggacgtgggcttcggcaagaccgaggtcgccctccgcgccgcccaccgggtggtg
gggcacggggcgcaggtggcgctgctggtgcctactacgctgctggccgagcagcacacc
caaaccttcaagagccgcttcgaaggtctcccggtgcgggtagaggggctctcccgcttc
acctccgagctcgatgagcaacgtattctgcgggacctcgaggcgggtgcggtagatatc
gtcatcggcacccaccgcctgctctccggagacctccggttcaaggatctggggcttctc
atcatagatgaggagcaccgcttcggggtggcccagaaggagcgcatccgcgagatagcc
gagacggtggacaccctctacctctccgccacccctattccccgcaccctctatagcgcc
ctagtagggctcaaggacctctcgagtatccagactccgcccccagggcgtaaacccata
cagaccgtacttgctccttacgatcccagcctagtgcgcgaggccatcttgagtgagatg
gagcggggcggcaaggtcttttacgttcatgatcgggtggctaccatccaggcccggcaa
cgttatctggagaacattgcccccgaagcccgcatcggcgtcgtccatgggcagatgccc
gaaggggatatcgaggaggtgatgctggccttcgccgagggtgctttcgacgtgctgttg
gctaccaccatcatcgaaagcggcctggacatccccgaggccaacaccatcgtcatcgag
cgggctgaccggttggggctggccgcgctgtatcagctccggggccgggtgggccgccgt
gaccaggaggcttacgcttacttttttcaccctccccgcctcaccgaggccgccgagcgc
cgcctctcggccatcgctgacctctccgatctgggctcaggccacctgctggccgagaaa
gatatggagatccgcggggtgggcaacctgctaggccccgagcagcacgggcatattcgg
gcggtgagcctggagatttacactgagctactcgcagaggctatcgccaaactcaaaggg
gaaaaaaccgagccagaaaagcacgtcaccctggatctggcggtttcggcccggctcacc
cccgagtacatcccctctgccgcggcccgcagccgttactacggcagattggccgaggcc
aagcgacttgcccaggttgcgcgcattgcgggggaactccgcgagcgctacggcgaaccc
cccgtagaggtggaaaacttcctggcccttacccgcttgcgcctcctggccgaggccaag
ggggtggtctccatcaccgaagacctcacctggctgcaactggtttttgagcgctggccc
ctcgactacgattcaaaagcgctgcgggccttgccctaccgcattgaacttacccagtat
ccgcctggattccgcatcgctaagaagggcttaagccaggagcagtactcccaggcagtg
agtgatctgctctatttggtggattaa
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