Methanosarcina siciliae T4/M: MSSIT_0021
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Entry
MSSIT_0021 CDS
T03865
Name
(GenBank) Replication factor A (ssDNA-binding protein)
KO
K07466
replication factor A1
Organism
msw
Methanosarcina siciliae T4/M
Pathway
msw03030
DNA replication
msw03420
Nucleotide excision repair
msw03430
Mismatch repair
msw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSSIT_0021
03420 Nucleotide excision repair
MSSIT_0021
03430 Mismatch repair
MSSIT_0021
03440 Homologous recombination
MSSIT_0021
03460 Fanconi anemia pathway
MSSIT_0021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
msw03000
]
MSSIT_0021
03032 DNA replication proteins [BR:
msw03032
]
MSSIT_0021
03400 DNA repair and recombination proteins [BR:
msw03400
]
MSSIT_0021
Transcription factors [BR:
msw03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MSSIT_0021
DNA replication proteins [BR:
msw03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MSSIT_0021
DNA repair and recombination proteins [BR:
msw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MSSIT_0021
MMR (mismatch excision repair)
MSSIT_0021
DSBR (double strand breaks repair)
HR (homologous recombination)
MSSIT_0021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Ssb-like_OB
REPA_OB_2
OB_MEIOB_N
TriTu
POT1PC
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
AKB26740
UniProt:
A0A0E3P2U3
LinkDB
All DBs
Position
complement(26523..27977)
Genome browser
AA seq
484 aa
AA seq
DB search
MTDIDTIYKKLSHVISREDFLKRIEEKVENMGGLCDEAMAAMLVANELGFSDAGRDNVKI
ENITPESGPVNFIARVVSVFDVKEFTRNDGTIGRVGNLIVGDETGKLKLTLWDNMADLIK
AGKVKIGQTVQISGYAKQGYSGVEVNIGNNGVLTESEEEVDVAASSQKIKDIKDGMGELN
LTGKVLEVSEIRTFQRKDGSGGKVGNLLIGDETGTLRVTLWDEKTDFLNQLEYGDTVELI
NAYARENAFTQKVELQIGNRSIIRKSEKQVEYEEVFTPVADIKADMNNINISGRVLDISE
VRTFEKKDGSAGRVANILLGDSTGKIRLTIWDEKTEILDEIDFDDTVEVLNAYSRENTFS
QQVELSLGARGIIQKSEKKVEYREKFTDIADIIPGENYSVQGKVSEIGELREFEREDGTE
NVVSNLQLEDETGSIRLTLWGEQAYVIEDLDIDSEIQIIDAYARYGLNEEIELSVGNRSR
VIIL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatattgacactatttataaaaagctcagccatgtcatcagtagagaggatttc
ctgaagcgcatagaggaaaaggtcgagaacatgggagggctttgtgacgaggcgatggct
gccatgctggtcgccaatgagctaggattctcggacgcgggaagggacaatgtaaaaata
gaaaacattacccctgagagcgggcctgttaattttatagcaagagttgtttcagttttt
gatgtcaaagagtttacccggaacgatgggactataggcagagttggaaacctgatcgtc
ggagacgaaaccggaaaactgaagttaaccctttgggacaacatggcagatttgattaag
gccggaaaggtaaagataggacagacagtccagataagcggatatgcaaagcagggctat
tccggagtggaagttaacatcggcaataatggcgtcctgaccgaaagtgaagaggaagtt
gatgttgctgcaagcagccagaagataaaggacataaaagacgggatgggagaactcaac
cttacaggcaaggtacttgaagtttctgaaatcagaactttccagcgaaaagacggaagc
ggtgggaaagtcggaaacctgcttatcggagacgaaacaggaacgctcagggtaacgctc
tgggacgaaaaaaccgattttttaaaccagctcgagtatggggacactgttgaactgatc
aatgcttacgcccgtgaaaatgcctttacgcaaaaggttgaattgcagatcggaaatcgg
agcataatccggaaaagcgaaaagcaagtagaatatgaagaagtgtttacccctgttgca
gatataaaggctgacatgaataatatcaatatttcaggaagggtacttgacatctcggaa
gtccgaactttcgagaaaaaagatggatctgccggcagggtggcaaatatccttctgggc
gattccacaggcaaaatcaggcttacaatctgggacgaaaaaaccgagattcttgacgag
attgatttcgatgataccgtggaagtcctcaatgcctattcccgggaaaacacattcagc
cagcaggttgaactcagccttggcgccagagggataattcagaaaagtgaaaaaaaggtc
gagtacagggagaaatttactgacatcgccgacattattccgggagagaattattccgtc
cagggaaaagtttccgaaatcggagaactgagagagtttgaaagggaagacggaaccgaa
aatgtggtctcaaacctccagcttgaggacgaaacaggaagtatccggctgacgctctgg
ggagaacaggcttatgtaatagaggatctggatattgactccgaaattcagattattgac
gcttatgccagatacgggttgaatgaagaaatagaacttagcgttgggaacaggagcagg
gtgattattctatga
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