Methanosarcina siciliae T4/M: MSSIT_0286
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Entry
MSSIT_0286 CDS
T03865
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
msw
Methanosarcina siciliae T4/M
Pathway
msw03022
Basal transcription factors
msw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSSIT_0286
09124 Replication and repair
03420 Nucleotide excision repair
MSSIT_0286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msw03021
]
MSSIT_0286
03036 Chromosome and associated proteins [BR:
msw03036
]
MSSIT_0286
03400 DNA repair and recombination proteins [BR:
msw03400
]
MSSIT_0286
Enzymes [BR:
msw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MSSIT_0286
Transcription machinery [BR:
msw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MSSIT_0286
Chromosome and associated proteins [BR:
msw03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MSSIT_0286
DNA repair and recombination proteins [BR:
msw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MSSIT_0286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
Zot
HBB
PhoH
ATPase
HTH_56
nSTAND3
AAA_34
OmpH
Sigma54_activat
Motif
Other DBs
NCBI-ProteinID:
AKB27005
UniProt:
A0A0E3P191
LinkDB
All DBs
Position
331979..334354
Genome browser
AA seq
791 aa
AA seq
DB search
MEQKNGYMRYFTKKSCYPNQAEAMEKIHSALLNQKIVLFEGACGTGKTLSSLAPALHVGR
KLNKAVIIVTNVHQQMVQFIHEARDINRDNSIKTTVFKGKTSMCPDNLDYEECRLKGENT
YDLLEFEREISSKEKDLKDAYEKYKRTKDPALYALRTELEKELEEARKKARSLRGHSCSK
LYEVLRFEGNEFSSWLFSDVRSPEEIMEYAEDRGMCGYELLKKELKNTELLICNFHHVLN
ADIFMTLLKWLERDPEDIILIFDEAHNIEASARSHSSITLSELTIEKALSEVGEIPEPDN
SPVFGAGTGAPGTGSGQGLGIPLDQDYASRLYAKRLFSCLLAAVRETYNSKLKFGERNRL
GKHWQDIQISDPYERLDVLKARFLRDAKKEGFADEEKVLTRLREIGEFGARLEDVYAENY
KKGLLPVPKRSQIRYVADFLSSYLVLSDRQNYYPILNMRRDFKSNRAVGRLELFTCIPKN
VTQPLLDSVYSAVLMSATLRPFEMIKSTLGITREVEEITYGTTFPQEKRLTLVVSVPPLF
AKNRDSPETLESLKEALLSATAASLGNVIIYFQSSAEAHRYKKLLEPELSVPVFLDEVGV
SAQEIRQKFFKIGEQGGKAVLITYLWGTLSEGVDFRDSRGRTVIVVGVGYPALNDRIKAV
ESAYDAVFGCGDGWEFAVQVPTIRKVRQAMGRIVRSPGDFGVRILLDARYQGSQIRKLGK
FSVFGYFPPEESKEFLDVAPRDVGSLVEDFFANLVPCKSEKKEKGTKRNGKEGQESPVSG
RVEFGSLAEKL
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaagaacggatacatgaggtactttacaaaaaaaagctgctaccctaaccag
gcagaagccatggagaagattcactctgctctcctgaatcagaaaatcgtactttttgaa
ggggcttgcgggacaggcaagaccctgagctcccttgctcctgcccttcatgtgggcagg
aagctcaacaaggccgtaatcatagtcacgaatgtccaccagcagatggtccagttcatc
cacgaagccagggacatcaacagggacaacagcataaaaacaactgttttcaagggcaag
acctctatgtgtcccgataacctcgactacgaggagtgcaggctgaaaggggaaaacacc
tatgatctgcttgagtttgagcgtgagatctcttcaaaggaaaaagatctcaaggacgcc
tacgaaaaatacaaacggacaaaagaccctgccctttacgccctcaggaccgagcttgaa
aaagaactcgaagaagcccgaaaaaaggcccggtctctgaggggtcactcctgctcaaag
ctttatgaggttctcaggttcgaaggaaacgagttttcttcctggctcttttcggacgta
agaagccccgaggagattatggaatatgcggaggatagaggtatgtgcgggtacgagctg
ctcaaaaaggaactaaaaaatacggagcttcttatctgcaatttccatcacgtactcaat
gctgacatcttcatgactctccttaaatggcttgagcgagaccctgaagatattattctg
atctttgacgaggcccacaacatcgaggcttctgccaggtctcattcctccataacgctc
tccgagctgaccattgaaaaagccctttccgaggtaggggaaattcccgaacctgacaac
tctccggtattcggagcaggtacaggtgcgcccgggacaggctccggacaggggctcggg
attcctcttgaccaggactatgcctcccgtctttatgcaaaaaggctcttttcctgcctt
ctcgccgcagtcagggagacctacaactcaaagctgaaattcggggagagaaacaggctt
gggaaacactggcaggacatccagatcagcgacccttatgagcgccttgacgtcctgaaa
gctcgttttttgcgggatgcaaagaaagaagggtttgcagacgaagaaaaagtgctgacc
cggctgcgagaaatcggggaattcggagcccggctggaagatgtctatgccgaaaattac
aaaaaaggactgcttcccgtgcccaaacgttcccagatacggtatgttgctgatttcctt
tcttcctatcttgtgctttcggacaggcagaactattatccgatcctgaacatgcgcagg
gacttcaaaagcaacagggcagtcggaaggcttgaacttttcacctgtattcccaaaaat
gtgacccagcctttgcttgattccgtctattcggctgtgcttatgtcagctactctccgg
cctttcgagatgatcaaatccacgctgggcattacccgggaagtagaagaaattacctac
gggactacttttccacaggaaaaaaggctgactcttgtggtttcggtccctcccctcttc
gcaaaaaacagggacagccccgaaaccctggaaagtttgaaagaagcgcttctttctgct
acggctgcatcgctgggaaatgtgatcatttatttccagagttctgcggaagcccaccgc
tataaaaaactccttgaaccagagctttcagtccctgttttccttgacgaggtcggagtc
tcagcccaggaaatcaggcagaagtttttcaaaataggggagcagggaggaaaagccgta
ctcataacctatctctggggaaccctgagtgaaggtgttgatttccgggactctcgcggc
aggaccgtgattgttgtgggggttggatacccggctctgaacgatagaataaaagctgtg
gagtcagcttatgatgctgtttttggctgtggggacggctgggagtttgcagtccaggtg
ccaactataaggaaggtcaggcaggcaatgggaagaatcgtccgctcccctggagatttc
ggggtaaggattctccttgatgcccgctaccagggttctcagattcgtaagctgggtaag
ttttcggtttttggatatttccctcccgaggaaagtaaggagtttctggatgtagctcca
agggacgtcggaagtcttgtagaagatttttttgcaaatctagttccttgcaaatcagaa
aaaaaggaaaaaggaacaaaaaggaatggaaaagaggggcaagagtctccggtttcaggt
agggtggagttcggaagtcttgcagaaaagctctaa
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