Methanosarcina siciliae T4/M: MSSIT_0519
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Entry
MSSIT_0519 CDS
T03865
Name
(GenBank) Putative Zn-dependent hydrolase in polyisoprenoid biosynthetic cluster
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
msw
Methanosarcina siciliae T4/M
Pathway
msw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSIT_0519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msw03019
]
MSSIT_0519
Messenger RNA biogenesis [BR:
msw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSSIT_0519
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKB27238
UniProt:
A0A0E3P1J3
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Position
617172..618515
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AA seq
447 aa
AA seq
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MTEIGIVAVGGYNEMGRNMTAIIIGEDIVILDMGLRLDRVQIHEDVEIDKMHSLELIEMG
AIPDDTIMKEINGTVRAIVCTHGHLDHIGAIPKLAHRYNAPILATPYTAAIIKQQIESER
KFEVCNRVIPLQAGGTYQVTEDVSIEFIRVQHSIIDCVLAAVHTPAGAVLYACDFKLDRT
PTMGEAPDFERFKSLGKEGVIAMITESTNAGRSGKTPSEQIAKDMVRDVLLGTEESDVGM
IITTFASHISRLKAIIEAAEEMGRIPVLMGRSMERYVGAARDIGYLELPSNVEIYGMRRD
VDRAFKRIMQDGKNKYLPIVTGHQGEPGSILVRVANGETPYTIEPGDKIIFSANVIPSPM
TQANRYALETKLKMKGGRIYDNVHVSGHAYREDHWELLRMVNPEHVIPAHGDMEMHGHYI
EMAEDAGYVLGDTVHLLRNGEVLYIEE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaataggtattgttgcagtcggcggttataacgaaatgggccgcaatatgact
gcaatcattattggtgaggatattgtcattctggatatggggctcaggcttgaccgggtt
caaattcatgaagatgttgaaattgacaagatgcattcccttgaactgatcgaaatgggg
gcaattcctgacgatactattatgaaagaaattaacgggactgtcagggcaattgtatgt
acccacgggcaccttgaccacataggtgcaatcccgaagcttgcccacaggtataatgcc
cccatacttgccaccccctataccgcagctattatcaaacagcagatagagtccgagcgc
aagttcgaggtctgcaacagggtcatccctttacaggcaggcggaacttaccaggttacg
gaagatgtctccatagaattcatccgggttcagcacagtattatcgactgtgtactcgca
gccgtgcacaccccggcaggagcagtcctttatgcctgtgatttcaagcttgacaggact
ccgacaatgggggaggctcctgactttgagcgtttcaagtccctcggaaaggaaggggtc
attgcaatgatcactgaaagcacaaacgccgggcgttcaggaaagactccttcggaacag
attgcaaaggacatggtcagggatgtactgcttgggaccgaagagtctgacgtgggcatg
ataattacgacttttgcatcgcatatttccaggctcaaagcaattatcgaggctgccgaa
gaaatgggtagaattccggtgcttatggggcgttccatggaacgctatgtgggtgctgcc
agggatatcggctaccttgaactcccctccaatgtggagatttacggcatgagaagagat
gtcgacagggcattcaagcgcatcatgcaggacggcaagaacaagtatctgcccattgtt
actgggcaccagggagaacctggctccattctcgtgagggttgcaaatggggaaacgcct
tacacaatcgaacccggagacaagatcattttctcagcaaacgtaatcccgagcccgatg
actcaggcaaaccgttatgctcttgagaccaaactcaagatgaagggcggtaggatctat
gacaacgtccatgtttcagggcatgcatacagggaagaccactgggagcttctgcgcatg
gtgaaccccgaacatgtaatccctgctcatggagatatggaaatgcacgggcactacatc
gagatggcggaagatgcgggttatgtactcggagataccgtacacctgctccgaaacggc
gaagtgttatatatagaagagtaa
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