KEGG   Methanosarcina siciliae T4/M: MSSIT_0523
Entry
MSSIT_0523        CDS       T03865                                 
Name
(GenBank) Transcription initiation factor B
  KO
K03124  transcription initiation factor TFIIB
Organism
msw  Methanosarcina siciliae T4/M
Pathway
msw03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:msw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    MSSIT_0523
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msw03021]
    MSSIT_0523
Transcription machinery [BR:msw03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     MSSIT_0523
 Prokaryotic type
  Archaeal type
    TFB
     MSSIT_0523
SSDB
Motif
Pfam: TFIIB Zn_Ribbon_TF Cas12f1-like_TNB Lar_restr_allev Sigma70_r4 Zn_ribbon_LysW RPA_interact_C Zn_ribbon_IS1595 Trm112p DUF7577 Zn_ribbon_SprT HTH_Tnp_ISL3 HTH_AsnC-type BRF2-like_C_cyclin_rpt Zn_ribbon_PaaD A2L_zn_ribbon Methyltransf_13 DUF7385 Ribosomal_S27e
Other DBs
NCBI-ProteinID: AKB27242
UniProt: A0A0E3P1I5
LinkDB
Position
623182..624195
AA seq 337 aa
MVEVERVRYSDTLEREKIRAMIKARKEKQKEQSFENEKAVCPECGSRNLVHDYERAELVC
GDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSRVSRKEIGRTYRFISRELALK
LMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq 1014 nt   +upstreamnt  +downstreamnt
atggtagaagtcgaaagagttcgctattcggacactcttgaaagggaaaaaatacgtgcc
atgattaaagctcgcaaagaaaagcaaaaagagcaaagttttgagaacgaaaaggccgtg
tgtccagaatgcggtagcaggaaccttgttcacgattatgagagagctgagctcgtgtgt
ggggactgcggacttgtcatcgatgccgactttgtggatgaaggaccggaatggcgagct
ttcgatcatgatcagcgcatgaagcgttcccgtgtgggtgcgcccatgacatatacaata
cacgacaaagggctttccacaatgattgactggaggaaccgtgattcctacggaaagtct
atctcctccaaaaatcgtgctcagctttatcgtttaagaaaatggcagcgtagaattcgt
gtaagcaacgcaacggaaagaaacctggcttttgccctttccgaactggacagaatggct
tctgctcttggtctgccaagaactgtcagggagactgcagcagttgtctacagaaaagct
gttgacaagaaccttatccgtgggcgcagtattgaaggtgtagccgcagcggctctctat
gcagcctgccgccagtgcagtgtcccgaggacgcttgatgaaatcgaagaggtatcaagg
gttagcagaaaagaaatcggaaggacttaccgtttcatttccagagaacttgccttaaaa
ctcatgccaacttcccctatcgactatgtcccgaggttctgctcagggcttaacctgaaa
ggagaagtccagtcaaagagcgttgagattctcaggcaggcttccgaaaaagaactcaca
agcggaagagggcctacaggagttgccgcagctgcaatttacattgcatccattctctgt
ggggagcggaggactcagcgcgaagtcgcagatgttgccggggttacggaagttaccatc
aggaacaggtataaggagcttgcagaagagttggatatcgaaattatcctctaa

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