Methanosarcina siciliae T4/M: MSSIT_0639
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Entry
MSSIT_0639 CDS
T03865
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
msw
Methanosarcina siciliae T4/M
Pathway
msw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSIT_0639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msw03019
]
MSSIT_0639
Messenger RNA biogenesis [BR:
msw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSSIT_0639
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSSIT_0639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
S1
ECR1_N_2
S1_RRP5
ALS_ss_C
HypA
zf-C3HC4_3
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
AKB27358
UniProt:
A0A0E3P1S8
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All DBs
Position
747859..748473
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AA seq
204 aa
AA seq
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MPGFRPPAREPVRSEEDLEKGGFVLPGELVGTTEEFKPGSGATIIGGDIYSTATGSVLID
RKARVVSVKPKTLTPNILKVGDIVYGKITDVRESGAMVEVAGIEGKENREIVNSRPGDVH
VSNVRDSYVKRLSDEFRPSDIIKARVIDVDRMRLTTSEDSLGVVKAYCSNCRGELVLEGK
KLKCPVCNMTETRKISTEYGKGIQ
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgccggggttcaggccgccagccagagaacccgtcagatctgaagaagaccttgaaaaa
ggaggctttgtccttccgggtgaacttgtcggaactacagaagagtttaagccaggttcc
ggggccacaataattggtggggatatctattccactgccacaggaagtgtgctcattgac
agaaaagccagagtggtctcggttaagccaaaaacccttaccccaaatatccttaaggta
ggggacatagtttacggcaagatcactgacgtccgcgagtccggggcgatggtggaagtt
gcaggcatagaaggaaaagagaacagggaaattgtcaactcaaggccaggggatgtccat
gtttcaaatgtgagggactcctatgtaaagagactctcagatgagttcagaccctctgat
atcataaaagccagagtcattgacgttgacagaatgcgccttacaacatccgaagattcc
cttggagttgtaaaagcttactgctcaaactgcagaggcgaacttgtcctggaagggaaa
aagcttaaatgcccggtctgcaatatgactgaaacccgcaagatctcaaccgagtacggg
aaaggaatccagtaa
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