Methanosarcina siciliae T4/M: MSSIT_0968
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Entry
MSSIT_0968 CDS
T03865
Name
(GenBank) DNA-directed RNA polymerase subunit B''
KO
K03045
DNA-directed RNA polymerase subunit B" [EC:
2.7.7.6
]
Organism
msw
Methanosarcina siciliae T4/M
Pathway
msw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSSIT_0968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msw03021
]
MSSIT_0968
Enzymes [BR:
msw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSSIT_0968
Transcription machinery [BR:
msw03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
MSSIT_0968
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
Motif
Other DBs
NCBI-ProteinID:
AKB27687
UniProt:
A0A0E3P2U2
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All DBs
Position
1181088..1182683
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AA seq
531 aa
AA seq
DB search
MQHHIDSFNKFIDYGLQKIIDEQKIIETDIEDTYLKLGKIRVEHPVVKEADGAIEKLYPN
EARLRNLSYSGPLYLEMSVVKEGIESEVMEAKIGQLPIMVKSKICNLLGLSEPEKVRYGE
DPLDPGGYFIIGGTERVVMTLEDLAPNKILVEYGERYGDSIEVAKVFSQKRGYRALVIVE
RGRKSLLEVSFPSISGRVYFITLMRALGIVTDEDIVNAVSSDPEIIKFMLENLEEAEVET
QEEAIEKIGARVAAGQAKEYQIKRANYVIDRYLFPHLGNDMRDRVPKAHFLARMAESCFE
LALGKRTEDDKDHYANKRLKLAGDLMEDLFRVSFNRLARDIKYQLERANMRNRELNVATI
VRADVLTDRLQHPLATGNWVGGRTGVSQLLDRNDYISTLSHLRRVISPLSRAQPHFEARD
LHATQWGRLCPSETPEGPNCGLVKNFAEMVELSTGIEETESIKKILYDLNVEKVVVKVPE
IPAKIKEILLDEFGEEIIEEFEETPEIETKYKEEDFYDYSDADDSGSAFGD
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcaccatatagactcatttaacaagtttatagattacgggctgcaaaagatcatt
gatgaacagaagattatagaaaccgacattgaagacacctacctcaaactcggcaagatc
agggtagaacatccggtggtaaaggaggcggacggggcaatagaaaagctttaccccaac
gaagcaaggctcagaaacctttcgtactcaggccccctctacctggagatgagtgtcgta
aaagaagggatcgaatccgaagtaatggaagcaaagatcgggcagcttcccatcatggtc
aaatccaagatctgcaatcttctcggccttagcgagccagagaaagttcgctatggggaa
gatccccttgatccggggggatatttcattatcggaggtactgaaagggtagttatgacc
ctggaagaccttgcccccaacaaaattcttgttgagtacggagaacgttacggtgactcc
atagaggtcgcaaaggtcttttcccagaaaagagggtacagagcactcgtaattgtggaa
agagggagaaagtccctgcttgaagtatctttcccttccatatccggcagagtatacttt
attacactcatgagggctctcgggatagtaactgacgaagatatagtaaatgcagtttca
agtgatcccgaaatcatcaaattcatgctggaaaaccttgaagaagccgaagtcgaaacc
caggaagaggccattgagaagatcggggcgagggttgctgccggacaggccaaggaatac
cagataaagagagcaaactacgttattgacaggtatcttttcccacacctcggaaacgat
atgagagacagggtcccaaaggctcatttcctggcaagaatggccgagtcctgcttcgag
ctcgcacttggaaagcgtaccgaagacgacaaagaccactacgcaaacaagaggctgaaa
ctcgcaggcgacctgatggaagaccttttcagggtatcctttaacaggcttgcaagggac
ataaagtaccagctcgaacgtgcaaacatgaggaacagggaacttaacgtcgctacgatt
gtaagggcagacgtcctgaccgaccgcctgcagcatcccctggcaacagggaattgggta
ggaggaaggacgggtgtttcccagcttcttgaccgtaacgattatatttctaccctttcc
cacctgcgccgtgtaatttccccgctttcaagggcccagccacacttcgaagcccgtgac
ctgcacgcaactcaatgggggcggctctgcccttccgagacccctgaaggacccaattgt
ggtctcgtaaaaaactttgccgaaatggtcgagctctccactggaatagaggaaactgag
agcattaaaaagatactctacgacctcaatgtcgaaaaagtagttgtgaaggtacccgaa
ataccggcaaagatcaaggaaatcctgctcgacgagttcggggaagagattattgaagag
tttgaagaaactccggaaatcgaaacaaagtacaaagaggaagacttctacgattattca
gatgcggacgactccggatcagcgttcggggactga
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