Methanosarcina siciliae T4/M: MSSIT_1343
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Entry
MSSIT_1343 CDS
T03865
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
msw
Methanosarcina siciliae T4/M
Brite
KEGG Orthology (KO) [BR:
msw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msw03032
]
MSSIT_1343
03400 DNA repair and recombination proteins [BR:
msw03400
]
MSSIT_1343
Enzymes [BR:
msw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MSSIT_1343
DNA replication proteins [BR:
msw03032
]
Prokaryotic type
DNA Topoisomerases
MSSIT_1343
DNA repair and recombination proteins [BR:
msw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MSSIT_1343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HHH_5
Cdd1
DNA_pol_lambd_f
DUF4332
IMS_HHH
Zn_ribbon_recom
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
AKB28062
UniProt:
A0A0E3P3P4
LinkDB
All DBs
Position
complement(1671872..1674130)
Genome browser
AA seq
752 aa
AA seq
DB search
MHLIVTEKNIAARRIAAILAPKSPKKERVSGVDVYRYELGKGKSRQETAVVGLSGHIVGI
DFPKEYNNWQKVDSRTLIDAEITTTPINRKIVTALRALGKEADRVTIATDYDREGELIGV
EALNIIKKVNPEVPFDRVRYSAITPKAIDAAFTNPTSVDFNLADAGHSRQVIDLVWGAAL
TRYISLAAGRLGKMFLSVGRVQSPTLSLIVDREKERNIFVPTPYWEIHVELETKSSETFS
AQHSTRRFLDKKEASEVFNKLGKKAELKEMEKGTKSDQPPTPFNTTGFISAANSIGLSPA
NAMRIAESLYTNGYISYPRTDNTVYPETLDLRAQIEIFKEGPFKEYAEALLEKKELIPTR
GKKETTDHPPIYPASLAKESELKEDEWKVYELVARRFFATFAGPSTWETMRLRLEINAEE
FRSNGARMLESGWRWYYPYNAPEDRLFPELSEGEILKVIKKEMLDKETQPPGRYGQGRLI
NIMEELGLGTKATRHEIISKLYSRAYIHGNPVQPTNTSFAVVETLERYSPTITKPDMTKL
LEENMDLIAEGKIKEESVLEESREMLQQVFSELDKNRDKIIESLQAGLREDKIIGKCPLC
GNELMIRRSKRGSRFIGCSNYPNCTFSLPLPKSGQIVVTDKQCETHGLHHIRIINAGKRP
WDLGCPQCNFIEWQKTQKEEQAQQPKKEKPKTITDIEGVGKATAGKLEEAGITSVEALAE
ADPIELAKTIKTSVKKVKTWQISCNGGIVEDL
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttatcgtaacggaaaaaaatatagcagcaaggaggatagctgcgattctggct
ccaaaaagtcctaagaaggaaagagtcagcggagtagacgtctaccggtacgagcttgga
aaaggcaaaagcagacaggaaactgcagttgtagggctttccgggcatattgttgggatt
gatttcccaaaagaatataacaactggcaaaaagttgattcaagaactctgatcgacgcc
gagattacaacaactccaatcaaccggaaaatagtgactgctttaagggcccttgggaaa
gaagcagacagagtcacgattgcaactgactacgaccgggaaggagaactgataggagtc
gaagctctgaatatcataaagaaagtgaaccctgaggtaccttttgacagggttcgctac
agtgcaatcaccccaaaagcaattgatgcagcatttacaaaccccacaagtgttgatttt
aaccttgccgatgccggtcactccaggcaggttattgatctggtctggggagctgccctt
acccgatatatttcccttgcagcaggcaggctcgggaaaatgttcctttctgtggggagg
gtgcaatccccaaccctatcacttatagtcgacagggaaaaagagagaaatatctttgtc
ccgactccttactgggaaatacatgtcgaacttgaaacaaaatcaagtgagactttttca
gcccagcactcaacccgccgtttcctggacaaaaaggaagcttccgaggtctttaataaa
ctggggaaaaaagccgaattaaaagagatggaaaaaggcacaaaaagtgaccagccccca
accccgtttaatactacaggctttatcagcgcggcaaactcaatcgggctcagccctgca
aacgccatgcgcatagccgaatctctctatactaacgggtacatatcctatcccaggacc
gacaatacggtttatcccgaaaccctcgacctcagggctcaaattgagatttttaaggaa
gggccttttaaggaatatgcagaagccctgcttgagaagaaagaacttatccccacccgc
gggaaaaaagaaacaacagaccatcctcctatctatccggcgtcccttgcaaaggaatcc
gagttaaaagaagatgaatggaaggtctacgagcttgtggccaggcgcttttttgcaacc
tttgcaggacccagcacctgggagaccatgcgcctgagactcgaaatcaatgccgaagag
ttcaggtcaaacggggcaagaatgcttgaatccggctggcgctggtattacccctacaat
gcccctgaagacaggctgtttccggaactcagcgaaggagaaatcctgaaagtgataaag
aaagagatgctggacaaggaaacccaacccccgggacgctacggacagggcaggttgatc
aacataatggaagagctgggcctgggcacgaaagccacccgccacgagattatcagcaag
ctctattccagggcatatatccacggaaatccggtacagcctacaaatacctcttttgcc
gtagtggaaactcttgaaagatactcgcccacgattacaaaaccggacatgacaaagctg
cttgaagaaaatatggacctgatcgcagaaggtaaaatcaaagaggagtccgtccttgaa
gagtccagagaaatgctccagcaggtcttttcggaacttgacaaaaaccgggacaaaatc
atagagtccctgcaggcaggcctcagggaagacaaaattataggcaaatgccccttatgc
ggaaacgaactcatgatccgacgatcgaaaagaggaagccgtttcataggctgcagcaat
taccctaactgcaccttctccctccccctgccaaagagcggccagatcgtggttaccgat
aagcaatgcgagacccacggcctgcaccacatccgcataattaatgccggtaaacgcccc
tgggacctcggctgtccccagtgcaactttattgaatggcaaaaaacccagaaggaagag
caggcccagcagccgaaaaaagaaaagcccaaaaccattacggatatcgaaggcgtagga
aaagccaccgccggaaaactggaagaagccgggatcacaagcgtggaagcccttgccgaa
gccgaccccatagaacttgcaaaaacaataaagacaagcgtaaaaaaggttaaaacatgg
cagatttcatgtaacggcggcatagttgaggacttataa
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