Methanosarcina siciliae T4/M: MSSIT_1699
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Entry
MSSIT_1699 CDS
T03865
Name
(GenBank) Putative ski2-type helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
msw
Methanosarcina siciliae T4/M
Brite
KEGG Orthology (KO) [BR:
msw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msw03019
]
MSSIT_1699
Messenger RNA biogenesis [BR:
msw03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
MSSIT_1699
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MGP3_C
Motif
Other DBs
NCBI-ProteinID:
AKB28418
UniProt:
A0A0E3P4G5
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All DBs
Position
2112503..2114983
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AA seq
826 aa
AA seq
DB search
MTLWVLGYAEKSKVVVMTIKDRMKQPLYMAELHIKDSYKGPRPHKIRVLTGKKNEEFIPP
QQFIELLRSANRIMLAEGGDPANEEAFLEMLRGFQLSADRVKICKYCWFNRRFNFVNSKS
IKYHDELICAECAKEELLRAVRSADSQYGEKSVDFLERVLHKTRDLDRTIRMLSPERLDP
EFTRYDTIRTSPTEATFRIKNLPLKKKFKEMLLQKSETLLPVQALSVEAGLLEGKNQFVV
SATATGKTLIGEMAGVQNLLDKKGKMLYLVPLVALANQKYDQFTERYSKLGLTSSIKIGA
ILIKTSQRVKMNTSPNADIIVGTYEGVDHMLRSGNADFLGKIGTVVIDEVHMLEDQERGH
RLDGLIGRLRYVAPEAQFIYLSATVANPEAYAKKLGARLVQYEHRPVPIDRHLLFCQENE
KAKLISQLAKEEYSMCSSKKHRGQTIVFTNSRRNCHKLAGTLSIRASPYHAGLSQYERKK
VETLFAKGELPVIVTTAALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYH
DRGVVVLMPVPGKSYSSAQSDTEEEVAIKLLQGEMLSVGVEYGEAEQLEEVLASVAVTSS
IQDLRNIHSLMFGVFDLDKLVSRLQSYRFLEKKGKKVSLTRFGKIIAAHFLPVSKAFLIR
DAVLAGNSPLKIVTNLEFFDAAYFKYANQIGSSLHVNMPSRVFQGAALDIIFDGESLSHL
DIKIRELMLNFASDFLTCGCRDSPYCGCAEQKFSEKIIRLRMEGLDPTRIIRKLEDKYGI
SAYQGDVFGYLDNAVRNLDAVELIARVHSKKEAAEESKRLRKKVQG
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgacgctatgggtcctaggctatgccgaaaaatcaaaagttgtagtgatgaccataaag
gaccggatgaaacagccgctttatatggctgagcttcacataaaggacagttataaaggt
ccacgtcctcataaaatcagggttcttaccggtaaaaaaaatgaggaattcatccctccc
cagcagttcatagagcttttgcgcagtgcaaacaggattatgctcgcagaaggaggggac
cccgcaaatgaagaggcttttcttgaaatgctcaggggctttcagctcagtgcggatagg
gttaagatctgcaagtactgctggttcaaccgacgttttaattttgtgaacagcaagtct
atcaagtaccatgacgagctcatctgtgccgagtgtgcaaaagaagaattgctccgggca
gttcgttcggcagactctcagtatggagaaaaatcggttgattttcttgaacgagtcctc
cacaaaacaagagaccttgaccgtacaatccggatgctgagccctgagaggctggaccct
gaattcacgcgttatgacactatccggacaagccccaccgaagccacttttaggataaag
aacctcccccttaaaaagaagtttaaggaaatgctgctccagaaatccgaaaccctgctc
cctgtacaggctctatctgtggaagccggtcttctggaaggaaaaaaccagtttgtggtt
tccgcaaccgcaaccggaaaaactcttataggtgagatggcaggggttcagaacctgctg
gataaaaaaggaaaaatgctttacctggtcccccttgttgctcttgcaaaccagaaatat
gaccagtttacggaacgctattcaaagctagggcttacaagctccattaaaattggtgca
attcttataaagacctctcagcgcgtgaaaatgaatacaagtcctaatgcggatataatt
gtaggtacttatgaaggagtagaccacatgctccgctcgggaaatgccgattttcttggc
aaaatagggactgttgttatagacgaggtccatatgctcgaagaccaggaaagagggcac
aggctggacgggcttataggaaggcttcgttatgtggcgcctgaagcccagtttatctac
ctttccgcaaccgttgcaaaccctgaggcctatgcaaagaaactcggagcccgacttgtc
cagtatgaacacaggccggtccccatagacaggcatctccttttctgccaggaaaatgaa
aaggcaaaactgatttcccagcttgcaaaagaagaatattcgatgtgctcttcaaaaaag
cataggggacagacaatagtctttacgaattcaaggagaaactgccataagcttgcggga
accctttcaatccgggcttccccttaccatgcagggctttcgcagtatgaaagaaaaaaa
gtggaaaccctttttgcaaaaggagagcttccggtgatcgtgacaactgctgctcttgca
gccggggtggactttccggcttcccaggttatattcgaatcccttgcaatgggaatagac
tggatttcggtccaggacttcctgcagatgagcggaagggcagggagacccgattatcat
gaccggggcgttgtcgtgctcatgcccgttccggggaagtcctattcaagtgcccagtcc
gataccgaagaagaggttgcaatcaagttactgcagggggaaatgctctctgtaggcgtt
gagtacggggaagctgaacagctggaagaggtcctggcctcggttgcagttacctcttcc
attcaggatttaaggaatatccattccctaatgttcggagtctttgatctcgataaactg
gtttcccggcttcagagctaccggttccttgagaaaaagggaaaaaaagtatcacttacc
cgtttcggaaagattattgcagctcatttcctgccggtctccaaagctttcctgattcga
gacgccgtgcttgcgggaaacagtccactgaaaattgtaaccaacctggagtttttcgat
gctgcctacttcaagtatgcaaatcagatcggaagctctctgcatgtgaacatgccttcg
agagtttttcagggtgcagctctcgatataatctttgacggggaatctctctcccatctg
gacatcaaaataagggaacttatgctgaactttgcctcggattttttaacctgtggctgc
cgggattctccttactgcggatgtgcagagcagaaattttcggagaagattatccggctg
aggatggaagggttggatcctacccggattatccgaaagcttgaggacaaatacggcatt
tccgcataccagggggatgttttcggatacctggataatgcggtacgtaacctcgatgct
gtggaactgattgcaagggtccattcgaaaaaggaagcagcagaagaatcaaagaggctc
aggaagaaagtccagggctga
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