Methanosarcina siciliae T4/M: MSSIT_2373
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Entry
MSSIT_2373 CDS
T03865
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
msw
Methanosarcina siciliae T4/M
Pathway
msw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSSIT_2373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msw03400
]
MSSIT_2373
DNA repair and recombination proteins [BR:
msw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSSIT_2373
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSSIT_2373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_22
AAA_30
AAA_16
P-loop_SecA
Kinesin
UB2H
ACDC
SWI2_SNF2
AAA_25
DUF87
Motif
Other DBs
NCBI-ProteinID:
AKB29092
UniProt:
A0A0E3P5W2
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All DBs
Position
complement(2971522..2973534)
Genome browser
AA seq
670 aa
AA seq
DB search
MKVSSQTSGESSKKKFELLHDARYWDSPQFKLVSGFEPKGSQPQAIEKLVEGLRKGEQFQ
TLLGVTGSGKTYTVANVINQVRKPTLVIAHNKTLAAQLYNEFREFFPENRVEYFVSYYDY
YQPESYLPAKDQYIEKDAQINPKIEQMRLAATASLMSRQDVIVVASVSCIYGLGNPENFQ
KMGFELKVGDKVQRKEILEKLIDIQFERNDMELMPGRFRVKGDTIDIIPGYFDDIIRVEL
FGDEVDRISEVDKQTGQRKEDMDYFFIYPARHYVIPEEEQKSAIRSILEELEEHLPTLGL
LESHRLKQRTLYDMEMIEETGNCKGIENYSRHFDHRQPGEQPFCLLDYFPDDFLLVIDES
HQTIPQLHGMYNGDRSRKKSLIDYGFRLPSAYDNRPLKFEEFEIYMKNVIFVSATPSDYE
REHSARIVEQIIRPTGLVDPEVEIRPLEGQVKDVMQEIRKIVERGDRALVTTLTKKLAEE
LTEFLARNEIKARYLHSDIKTIERTEIIRELRLGKFDVLVGINLLREGLDIPEVGFIGIL
DADKEGFLRDSKSLIQIIGRAARNSSSKVVLYADNRTDSIKKAVNETERRRSMQISYNEE
HGIIPKTIRKPIREKVVDITDTKHIPKTDIPNVIIELDAEMREAADRLDFERAIQLRELI
KNLEKEIKAV
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtttccagccagacatccggggagtcatccaaaaaaaagttcgaactactgcac
gatgcgcggtactgggacagcccgcagtttaaactggtctccgggtttgaacctaaaggg
tcccagccccaggcgatcgaaaaacttgtggaagggctgaggaaaggagagcagttccag
accctgctcggggtgaccggatccggaaagacctacacggttgcaaatgttataaaccag
gttcgaaaaccgactcttgttattgcccacaacaagaccctggctgcccagctttataac
gagttcagggagttcttccctgaaaacagggttgagtactttgtttcatactacgactat
taccagcctgaatcctatctccctgctaaggaccagtacattgaaaaagatgcccagata
aacccgaagatcgaacagatgcgccttgcagccacagcctccctgatgtcgcgccaggac
gttattgtggtggcttcggtgtcctgcatctacgggcttggcaaccctgagaatttccag
aagatggggtttgaactgaaggtcggagataaggtccagagaaaagaaatcctcgagaaa
cttatcgacatccagtttgaaagaaacgacatggaactcatgcccggacgttttcgcgta
aaaggagataccattgatattattcccggttacttcgatgacatcatccgggtcgaactc
ttcggggacgaggtggaccggatttccgaagtggacaagcagacaggccagcgaaaagaa
gacatggactacttcttcatctaccctgcgcggcactatgttattccggaagaggagcag
aaaagtgcaatccggtccattcttgaagagcttgaagaacacctccccaccctcgggctg
ctcgaatcccaccggctaaaacaacgcacgctctacgacatggagatgattgaggaaacc
ggcaactgtaagggcattgagaattactcaaggcactttgaccacaggcagcccggagag
cagcctttctgtttgcttgactatttccctgacgatttcctcctggtcattgacgaaagc
caccagacaatccctcagcttcacgggatgtacaatggggaccgttctcggaaaaagagc
cttatcgattatggtttcaggctccccagtgcctatgacaacagacccctgaaatttgaa
gaatttgaaatatatatgaaaaacgtgatcttcgtctcggcaaccccttcggactacgaa
cgggagcattctgccaggattgtggaacagatcatccgtccgacagggctcgttgaccct
gaggttgagatacgtccccttgaaggccaggtaaaggatgttatgcaggagatccggaaa
atagtggagaggggagaccgcgctcttgtgaccacccttaccaagaagctcgcagaagaa
ctgaccgagttccttgcccgaaatgagattaaggcccgctacctgcactccgatatcaag
accatagaaaggacggaaatcatccgcgaactgcgccttggcaagttcgacgtccttgtc
gggatcaacctgctcagggaagggcttgatattcccgaagtaggttttatcggaatcctt
gatgcggataaggaaggctttctccgggactcaaagagtcttatccagatcataggccgc
gcagcccggaactccagttcgaaggtcgtcctctacgccgacaacaggacagattccatc
aaaaaagcagtaaatgagaccgaacgccgccgttccatgcagatctcctacaatgaagaa
cacggcataatcccgaaaaccatccggaaacccatcagggaaaaggtcgtggatattacc
gacacaaaacacatcccgaagaccgatatccctaatgtaattatcgaactggacgccgag
atgagggaggctgccgacaggctggacttcgagcgcgcaatccagctaagggagctcata
aagaacctggaaaaagagataaaagcggtgtga
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