Entry |
|
Name |
(GenBank) Ribonuclease PH
|
KO |
K11600 | exosome complex component RRP41 |
|
Organism |
msw Methanosarcina siciliae T4/M
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:msw00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSIT_2691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:msw03019]
MSSIT_2691
Messenger RNA biogenesis [BR:msw03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSSIT_2691
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSSIT_2691
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
3421800..3423311
|
AA seq |
503 aa
MSNKPENLILITDDGLRLDGRCADEIRPMKIEIGVLSRADGSCYLEWGRNKILVGVFGPR
EAHPRRSQRADSAVIRYKYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVILAELYPK
TAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGQIVLDLNKEED
NYGEADFPVAMTQDGEITLIQMDGHLTPEEIKKGLELVKKGCKEILALQQAVLRKKFETP
VEEPAAEAEEPEVEGETEKLAPTEFASEAAAVEEAFEETEELEEALEETSEPDILFCSEV
IPDSEEEEAEEKAEEEEAEEEAEEEEAEEEAEEEEAEEEAEEEEAEEEEAEEEAEEEEAE
EEEAEEEEAEEEAEEEAEEEAEEEEAEEEEAEEDLEDDLEEDLEEFEGEEFAEEPLEEEA
DSGEAEEEIELEAESEGLEEEADVEESPAPEEIVEPEIEAEVEVEEAPEAVEAEEEPEEE
KSEGPWKVVKDPSEDEDRGEKDE |
NT seq |
1512 nt +upstreamnt +downstreamnt
atgagtaataaacctgaaaatttaatattaatcactgacgatgggctgcgccttgacggg
agatgtgcggatgagataaggcccatgaaaattgagatcggtgtactttcacgggccgat
ggttcatgttatctagaatggggaaggaataagattctggtaggcgtgttcggccccagg
gaagctcatccccgccgcagccagcgcgcagattcggcagtaatccgctacaaatacaat
atggcatcattctccgtggaggaccgcgctcgtccgggccccagcaggcggagcattgaa
atctcaaaggtttccagggaagctttcgagcctgtgatcctggctgagctgtaccctaag
acagcaattgacattttcgtagaagtgcttcaggccgatgcagggacaaggacagcagca
attaacgcttccagtattgcccttgcagatgccggaatcccgatgaagggccttattacc
tcctgtgctttcgggaaggttgacgggcagattgtacttgacctgaataaggaagaggac
aactacggagaagctgacttccctgtagcaatgacccaggacggagaaattactcttatc
cagatggacgggcaccttacgcctgaagaaatcaagaaagggcttgagcttgtaaagaag
ggctgcaaagagatccttgcacttcagcaggcagttctgagaaagaagtttgagactcct
gttgaggagcctgcggcagaagccgaagaacccgaagttgaaggcgaaaccgaaaagctt
gccccaaccgaattcgcttccgaggcagcagctgttgaagaggcttttgaggaaactgaa
gaactcgaagaggccctcgaagaaacctctgaacctgatatccttttttgcagcgaagta
atccctgactccgaagaagaggaagctgaagaaaaggctgaagaagaggaagccgaagaa
gaggctgaagaagaggaagccgaagaagaggctgaagaagaggaagccgaagaagaggct
gaagaagaggaagctgaagaagaggaagccgaagaagaggctgaagaagaggaagccgaa
gaagaggaagctgaagaagaggaagccgaagaagaggctgaagaagaggctgaagaagag
gctgaagaagaggaagccgaagaagaggaagccgaagaagacttagaggacgacttagaa
gaagatctggaagaattcgaaggagaagaatttgcagaggaacctcttgaagaagaagct
gattccggagaagccgaagaagaaattgagcttgaagctgaaagcgagggacttgaagag
gaagccgatgtcgaggaaagccccgctccggaagaaattgttgagcctgaaatagaggcc
gaagtcgaagttgaagaagctcccgaagcagtagaggcagaagaagagcctgaagaagaa
aaatccgaaggtccctggaaggtagtaaaagacccctctgaagacgaagacagaggtgaa
aaagatgagtga |