Methanosarcina siciliae T4/M: MSSIT_2691
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Entry
MSSIT_2691 CDS
T03865
Name
(GenBank) Ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
msw
Methanosarcina siciliae T4/M
Pathway
msw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSIT_2691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msw03019
]
MSSIT_2691
Messenger RNA biogenesis [BR:
msw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSSIT_2691
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSSIT_2691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AKB29410
UniProt:
A0A0E3P6P6
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All DBs
Position
3421800..3423311
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AA seq
503 aa
AA seq
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MSNKPENLILITDDGLRLDGRCADEIRPMKIEIGVLSRADGSCYLEWGRNKILVGVFGPR
EAHPRRSQRADSAVIRYKYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVILAELYPK
TAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGQIVLDLNKEED
NYGEADFPVAMTQDGEITLIQMDGHLTPEEIKKGLELVKKGCKEILALQQAVLRKKFETP
VEEPAAEAEEPEVEGETEKLAPTEFASEAAAVEEAFEETEELEEALEETSEPDILFCSEV
IPDSEEEEAEEKAEEEEAEEEAEEEEAEEEAEEEEAEEEAEEEEAEEEEAEEEAEEEEAE
EEEAEEEEAEEEAEEEAEEEAEEEEAEEEEAEEDLEDDLEEDLEEFEGEEFAEEPLEEEA
DSGEAEEEIELEAESEGLEEEADVEESPAPEEIVEPEIEAEVEVEEAPEAVEAEEEPEEE
KSEGPWKVVKDPSEDEDRGEKDE
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataaacctgaaaatttaatattaatcactgacgatgggctgcgccttgacggg
agatgtgcggatgagataaggcccatgaaaattgagatcggtgtactttcacgggccgat
ggttcatgttatctagaatggggaaggaataagattctggtaggcgtgttcggccccagg
gaagctcatccccgccgcagccagcgcgcagattcggcagtaatccgctacaaatacaat
atggcatcattctccgtggaggaccgcgctcgtccgggccccagcaggcggagcattgaa
atctcaaaggtttccagggaagctttcgagcctgtgatcctggctgagctgtaccctaag
acagcaattgacattttcgtagaagtgcttcaggccgatgcagggacaaggacagcagca
attaacgcttccagtattgcccttgcagatgccggaatcccgatgaagggccttattacc
tcctgtgctttcgggaaggttgacgggcagattgtacttgacctgaataaggaagaggac
aactacggagaagctgacttccctgtagcaatgacccaggacggagaaattactcttatc
cagatggacgggcaccttacgcctgaagaaatcaagaaagggcttgagcttgtaaagaag
ggctgcaaagagatccttgcacttcagcaggcagttctgagaaagaagtttgagactcct
gttgaggagcctgcggcagaagccgaagaacccgaagttgaaggcgaaaccgaaaagctt
gccccaaccgaattcgcttccgaggcagcagctgttgaagaggcttttgaggaaactgaa
gaactcgaagaggccctcgaagaaacctctgaacctgatatccttttttgcagcgaagta
atccctgactccgaagaagaggaagctgaagaaaaggctgaagaagaggaagccgaagaa
gaggctgaagaagaggaagccgaagaagaggctgaagaagaggaagccgaagaagaggct
gaagaagaggaagctgaagaagaggaagccgaagaagaggctgaagaagaggaagccgaa
gaagaggaagctgaagaagaggaagccgaagaagaggctgaagaagaggctgaagaagag
gctgaagaagaggaagccgaagaagaggaagccgaagaagacttagaggacgacttagaa
gaagatctggaagaattcgaaggagaagaatttgcagaggaacctcttgaagaagaagct
gattccggagaagccgaagaagaaattgagcttgaagctgaaagcgagggacttgaagag
gaagccgatgtcgaggaaagccccgctccggaagaaattgttgagcctgaaatagaggcc
gaagtcgaagttgaagaagctcccgaagcagtagaggcagaagaagagcctgaagaagaa
aaatccgaaggtccctggaaggtagtaaaagacccctctgaagacgaagacagaggtgaa
aaagatgagtga
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