KEGG   Methanosarcina siciliae T4/M: MSSIT_2691
Entry
MSSIT_2691        CDS       T03865                                 
Name
(GenBank) Ribonuclease PH
  KO
K11600  exosome complex component RRP41
Organism
msw  Methanosarcina siciliae T4/M
Pathway
msw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSSIT_2691
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msw03019]
    MSSIT_2691
Messenger RNA biogenesis [BR:msw03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MSSIT_2691
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     MSSIT_2691
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: AKB29410
UniProt: A0A0E3P6P6
LinkDB
Position
3421800..3423311
AA seq 503 aa
MSNKPENLILITDDGLRLDGRCADEIRPMKIEIGVLSRADGSCYLEWGRNKILVGVFGPR
EAHPRRSQRADSAVIRYKYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVILAELYPK
TAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGQIVLDLNKEED
NYGEADFPVAMTQDGEITLIQMDGHLTPEEIKKGLELVKKGCKEILALQQAVLRKKFETP
VEEPAAEAEEPEVEGETEKLAPTEFASEAAAVEEAFEETEELEEALEETSEPDILFCSEV
IPDSEEEEAEEKAEEEEAEEEAEEEEAEEEAEEEEAEEEAEEEEAEEEEAEEEAEEEEAE
EEEAEEEEAEEEAEEEAEEEAEEEEAEEEEAEEDLEDDLEEDLEEFEGEEFAEEPLEEEA
DSGEAEEEIELEAESEGLEEEADVEESPAPEEIVEPEIEAEVEVEEAPEAVEAEEEPEEE
KSEGPWKVVKDPSEDEDRGEKDE
NT seq 1512 nt   +upstreamnt  +downstreamnt
atgagtaataaacctgaaaatttaatattaatcactgacgatgggctgcgccttgacggg
agatgtgcggatgagataaggcccatgaaaattgagatcggtgtactttcacgggccgat
ggttcatgttatctagaatggggaaggaataagattctggtaggcgtgttcggccccagg
gaagctcatccccgccgcagccagcgcgcagattcggcagtaatccgctacaaatacaat
atggcatcattctccgtggaggaccgcgctcgtccgggccccagcaggcggagcattgaa
atctcaaaggtttccagggaagctttcgagcctgtgatcctggctgagctgtaccctaag
acagcaattgacattttcgtagaagtgcttcaggccgatgcagggacaaggacagcagca
attaacgcttccagtattgcccttgcagatgccggaatcccgatgaagggccttattacc
tcctgtgctttcgggaaggttgacgggcagattgtacttgacctgaataaggaagaggac
aactacggagaagctgacttccctgtagcaatgacccaggacggagaaattactcttatc
cagatggacgggcaccttacgcctgaagaaatcaagaaagggcttgagcttgtaaagaag
ggctgcaaagagatccttgcacttcagcaggcagttctgagaaagaagtttgagactcct
gttgaggagcctgcggcagaagccgaagaacccgaagttgaaggcgaaaccgaaaagctt
gccccaaccgaattcgcttccgaggcagcagctgttgaagaggcttttgaggaaactgaa
gaactcgaagaggccctcgaagaaacctctgaacctgatatccttttttgcagcgaagta
atccctgactccgaagaagaggaagctgaagaaaaggctgaagaagaggaagccgaagaa
gaggctgaagaagaggaagccgaagaagaggctgaagaagaggaagccgaagaagaggct
gaagaagaggaagctgaagaagaggaagccgaagaagaggctgaagaagaggaagccgaa
gaagaggaagctgaagaagaggaagccgaagaagaggctgaagaagaggctgaagaagag
gctgaagaagaggaagccgaagaagaggaagccgaagaagacttagaggacgacttagaa
gaagatctggaagaattcgaaggagaagaatttgcagaggaacctcttgaagaagaagct
gattccggagaagccgaagaagaaattgagcttgaagctgaaagcgagggacttgaagag
gaagccgatgtcgaggaaagccccgctccggaagaaattgttgagcctgaaatagaggcc
gaagtcgaagttgaagaagctcccgaagcagtagaggcagaagaagagcctgaagaagaa
aaatccgaaggtccctggaaggtagtaaaagacccctctgaagacgaagacagaggtgaa
aaagatgagtga

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